Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.3e-106 389.0 214 100.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.6e-49 199.5 155 77.4
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.3e-48 197.2 152 74.3
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-48 196.8 152 73.7
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.2e-48 196.4 152 73.7
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.8e-48 196.1 152 73.7
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.3e-48 194.9 127 84.3
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.2e-47 191.0 152 72.4
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.6e-46 190.3 151 69.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.6e-43 180.3 158 65.2
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-40 169.1 152 67.8
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 6.2e-35 151.8 146 56.8
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.8e-34 150.2 127 61.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 3.1e-34 149.4 146 56.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.2e-32 143.3 146 56.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.1e-31 141.0 127 57.5
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.6e-30 137.1 128 58.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 3.5e-30 136.0 152 52.6
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.5e-30 136.0 127 55.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 7.8e-30 134.8 152 50.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.0e-29 134.4 127 56.7
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-29 133.7 127 56.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.7e-29 133.7 152 53.3
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.9e-29 132.5 155 50.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 6.6e-29 131.7 152 52.0
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 6.6e-29 131.7 147 52.4
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 8.6e-29 131.3 155 55.5
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 8.6e-29 131.3 153 50.3
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 8.6e-29 131.3 155 51.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 8.6e-29 131.3 150 51.3
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.1e-28 131.0 147 53.7
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.1e-28 131.0 147 52.4
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-28 129.8 152 50.7
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 3.3e-28 129.4 156 50.0
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 3.3e-28 129.4 156 50.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 4.3e-28 129.0 153 50.3
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 5.6e-28 128.6 152 50.0
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 7.3e-28 128.3 152 50.0
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 9.5e-28 127.9 152 47.4
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 9.5e-28 127.9 155 48.4
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.2e-27 127.5 128 53.9
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.1e-27 126.7 85 85.9
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.8e-27 126.3 155 48.4
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.8e-27 126.3 153 52.9
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 4.7e-27 125.6 155 47.7
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 4.7e-27 125.6 152 48.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.7e-27 125.6 153 49.7
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 6.2e-27 125.2 155 49.7
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 6.2e-27 125.2 153 48.4
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 6.2e-27 125.2 100 72.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.3e-26 123.2 152 50.0
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.3e-26 123.2 153 51.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 6.8e-26 121.7 128 50.0
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.5e-25 120.6 152 46.7
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.4e-25 119.4 155 45.8
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 5.8e-25 118.6 127 52.0
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.8e-25 118.6 152 46.1
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.5e-25 118.2 113 53.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 7.5e-25 118.2 153 46.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 9.8e-25 117.9 152 46.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.7e-24 117.1 161 46.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.2e-24 116.7 186 43.5
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 3.7e-24 115.9 149 49.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.3e-24 114.8 127 52.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.1e-23 114.4 128 50.8
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.4e-23 114.0 148 47.3
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.9e-23 113.6 127 49.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.2e-23 112.8 146 45.9
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 5.4e-23 112.1 150 44.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.7e-22 109.8 152 44.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.9e-21 105.9 152 46.1
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 6.6e-21 105.1 125 49.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 8.6e-21 104.8 125 48.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 8.6e-21 104.8 155 44.5
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.6e-21 104.8 125 47.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 8.6e-21 104.8 129 49.6
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.1e-20 104.4 127 47.2
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.1e-20 104.4 152 43.4
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.9e-20 103.6 154 45.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 4.3e-20 102.4 152 42.8
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 9.5e-20 101.3 127 46.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.1e-19 100.1 152 45.4
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.6e-19 99.4 147 44.2
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 4.7e-19 99.0 217 32.7
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.1e-19 98.2 118 50.0
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 8.1e-19 98.2 155 42.6
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.3e-18 96.7 155 41.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.2e-18 95.5 125 46.4
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 6.8e-18 95.1 99 51.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 8.9e-18 94.7 125 46.4
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.0e-17 93.6 125 46.4
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.9e-16 89.7 182 42.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.8e-16 89.4 147 41.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.7e-14 83.2 126 43.7
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.7e-13 80.5 99 47.5
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 6.6e-13 78.6 157 36.9
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-12 77.0 76 55.3
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 5.6e-12 75.5 99 45.5
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 7.3e-12 75.1 97 48.5
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 6.2e-11 72.0 128 38.3
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.2e-09 67.8 84 38.1
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.0e-09 67.0 74 45.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 5.8e-09 65.5 154 33.8
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 7.6e-09 65.1 153 33.3
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 9.9e-09 64.7 76 48.7
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 9.3e-07 58.2 93 37.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.7e-06 56.6 152 30.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 6.0e-06 55.5 63 52.4


User provided reference genes

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