Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349061 Rosa chinensis HOM05D006638 ORTHO05D008246 2.3e-19 97.8 47 100.0
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 2.0e-18 94.7 47 95.7
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 1.3e-17 92.0 47 93.6
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.3e-17 92.0 47 93.6
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.3e-17 92.0 47 93.6
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.3e-17 92.0 47 93.6
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 3.7e-17 90.5 47 91.5
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 2.0e-15 84.7 47 80.9
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 4.5e-15 83.6 47 78.7
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 2.9e-14 80.9 45 80.0
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 2.9e-14 80.9 47 83.0
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 1.9e-13 78.2 45 80.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 3.2e-13 77.4 43 79.1
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 4.2e-13 77.0 44 77.3
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 5.5e-13 76.6 45 73.3
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 5.5e-13 76.6 44 77.3
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 5.5e-13 76.6 47 74.5
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 9.4e-13 75.9 44 75.0
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 9.4e-13 75.9 44 75.0
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 1.6e-12 75.1 42 78.6
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 6.1e-12 73.2 47 70.2
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 8.0e-12 72.8 45 68.9
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 1.4e-11 72.0 43 74.4
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 1.8e-11 71.6 44 72.7
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 3.0e-11 70.9 44 72.7
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 5.2e-11 70.1 43 69.8
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 5.2e-11 70.1 44 68.2
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 6.8e-11 69.7 42 71.4
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 8.8e-11 69.3 42 71.4
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 1.5e-10 68.6 42 66.7
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 1.5e-10 68.6 44 68.2
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 2.6e-10 67.8 47 61.7
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 2.6e-10 67.8 47 66.0
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 3.4e-10 67.4 44 68.2
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 4.4e-10 67.0 44 65.9
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 4.4e-10 67.0 42 69.0
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 5.7e-10 66.6 44 65.9
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 7.5e-10 66.2 42 69.0
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 1.7e-09 65.1 41 68.3
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.7e-09 65.1 42 66.7
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.7e-09 65.1 42 66.7
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 1.7e-09 65.1 43 65.1
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 3.7e-09 63.9 39 69.2
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 3.7e-09 63.9 36 77.8
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 6.3e-09 63.2 46 65.2
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 1.1e-08 62.4 39 74.4
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 1.1e-08 62.4 43 60.5
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 1.1e-08 62.4 45 57.8
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 1.1e-08 62.4 39 66.7
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 1.4e-08 62.0 39 71.8
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 2.4e-08 61.2 41 65.9
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 3.1e-08 60.8 42 64.3
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 3.1e-08 60.8 39 66.7
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 4.1e-08 60.5 40 62.5
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 4.1e-08 60.5 41 58.5
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 4.1e-08 60.5 40 70.0
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 5.4e-08 60.1 39 69.2
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 5.4e-08 60.1 39 69.2
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 5.4e-08 60.1 38 71.1
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 9.1e-08 59.3 47 55.3
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 9.1e-08 59.3 44 59.1
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 1.2e-07 58.9 39 61.5
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 1.6e-07 58.5 42 59.5
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 2.0e-07 58.2 44 65.9
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 2.7e-07 57.8 43 53.5
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.7e-07 57.8 47 53.2
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 4.5e-07 57.0 39 59.0
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 5.9e-07 56.6 44 59.1
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 5.9e-07 56.6 44 59.1
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 5.9e-07 56.6 43 62.8
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 7.7e-07 56.2 46 50.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.0e-06 55.8 45 57.8
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 1.3e-06 55.5 32 71.9
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 1.3e-06 55.5 44 56.8
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.7e-06 55.1 38 63.2
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 5.0e-06 53.5 38 60.5
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 8.5e-06 52.8 43 60.5


User provided reference genes

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