Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 9.9e-310 1066.2 659 100.0
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.8e-230 800.8 635 75.3
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.7e-227 791.6 658 71.9
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-226 790.4 657 73.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.4e-225 785.4 592 76.7
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-223 780.4 658 71.6
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-218 763.5 652 71.9
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.7e-163 580.5 674 57.7
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 2.9e-160 569.7 648 55.9
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 9.4e-159 564.7 611 56.1
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 3.1e-109 400.2 629 46.4
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 4.1e-106 389.8 503 54.5
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 6.0e-105 386.0 689 46.3
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 3.9e-104 383.3 695 45.6
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 2.6e-100 370.5 484 49.8
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 3.7e-99 366.7 504 49.0
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 6.4e-91 339.3 661 40.2
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.3e-83 315.1 681 39.5
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.1e-82 312.0 610 40.8
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.1e-77 295.4 612 40.0
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.4e-76 290.4 671 39.2
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.5e-76 290.0 546 43.4
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.8e-72 278.1 589 40.6
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 3.0e-72 277.3 589 41.8
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.3e-71 273.9 595 36.1
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.3e-70 271.9 519 40.7
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.1e-66 258.8 590 35.4
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 4.2e-66 256.9 512 40.0
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 1.3e-56 225.3 419 39.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.8e-54 217.6 492 38.4
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.1e-53 214.2 331 45.0
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 7.7e-52 209.5 439 38.0
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 3.8e-51 207.2 431 37.4
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 5.0e-51 206.8 430 37.0
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 1.4e-50 205.3 494 34.4
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 6.1e-49 199.9 381 39.1
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 8.8e-48 196.1 297 43.1
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 8.8e-48 196.1 405 37.3
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.2e-46 191.4 298 41.6
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 6.3e-46 189.9 455 38.5
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 4.1e-45 187.2 441 40.1
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.2e-44 185.7 421 34.9
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 1.2e-44 185.7 348 39.4
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.5e-44 185.3 229 48.9
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.2e-43 181.4 444 36.0
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 1.4e-42 178.7 416 36.5
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 1.9e-42 178.3 318 38.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.9e-42 178.3 501 32.3
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 4.7e-41 173.7 335 37.9
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.8e-40 171.8 370 38.6
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 3.9e-40 170.6 318 41.2
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 5.1e-40 170.2 451 33.7
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 6.7e-40 169.9 696 31.3
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.1e-39 169.1 428 33.2
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.0e-39 168.3 530 30.4
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.6e-39 167.9 360 37.2
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 2.6e-39 167.9 502 31.3
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.7e-38 165.2 421 34.0
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.7e-38 165.2 319 37.6
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 3.1e-37 161.0 401 33.7
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 9.1e-37 159.5 494 33.6
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 9.1e-37 159.5 571 31.3
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 7.7e-36 156.4 339 36.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.3e-35 155.6 414 34.3
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 4.2e-34 150.6 391 36.8
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 4.2e-34 150.6 476 29.8
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 7.2e-34 149.8 304 39.5
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 1.2e-33 149.1 375 35.2
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 2.1e-33 148.3 344 38.4
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 4.7e-33 147.1 340 35.6
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.8e-32 145.2 326 38.7
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 5.2e-32 143.7 324 37.3
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-31 142.1 311 38.6
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.5e-31 142.1 345 36.5
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.3e-30 139.0 129 57.4
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 2.2e-30 138.3 404 31.2
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.8e-29 135.2 369 39.6
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 4.1e-29 134.0 401 33.9
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.6e-28 132.1 265 36.2
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.7e-28 131.3 341 34.3
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 3.5e-28 131.0 487 29.6
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.9e-27 127.9 353 33.4
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 5.0e-27 127.1 376 31.1
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.1e-26 125.9 273 33.7
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 5.5e-26 123.6 386 29.8
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 3.0e-24 117.9 353 35.7
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 3.0e-24 117.9 236 35.2
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 1.2e-23 115.9 361 30.7
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.5e-23 115.5 205 38.5
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.2e-22 111.7 361 31.0
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 1.4e-21 109.0 205 37.6
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 1.4e-21 109.0 205 37.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.8e-21 108.6 305 31.8
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 5.9e-20 103.6 366 29.2
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 7.7e-20 103.2 322 30.7
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.3e-19 102.4 484 26.9
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 2.5e-18 98.2 340 30.6
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.2e-18 97.8 340 30.0
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 9.4e-18 96.3 338 30.5
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.1e-17 95.1 340 30.0
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.7e-17 94.7 78 55.1
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-17 94.4 340 30.0
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 6.1e-17 93.6 105 49.5
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 8.8e-16 89.7 292 29.8
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.5e-15 89.0 225 30.7
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.4e-15 87.8 418 28.0
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.7e-15 87.0 292 30.5
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 2.2e-14 85.1 227 29.1
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.6e-12 79.0 406 26.8
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 3.5e-12 77.8 375 27.2
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 2.5e-10 71.6 119 33.6
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 3.3e-10 71.2 102 35.3
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 4.3e-10 70.9 84 40.5
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 8.0e-09 66.6 413 27.1
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.3e-08 65.1 391 25.6
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 3.0e-08 64.7 195 29.7
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 6.8e-08 63.5 371 24.0
FvH4_7g26910 Fragaria vesca HOM05D018285 ORTHO05D020673 3.4e-07 61.2 67 53.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.4e-07 60.8 183 27.3
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 5.7e-07 60.5 215 24.7
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 5.7e-07 60.5 200 23.5
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 9.8e-07 59.7 187 28.9
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.7e-06 58.9 189 24.9
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.7e-06 58.9 192 28.1
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.7e-06 58.9 238 24.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 2.2e-06 58.5 194 25.3
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 2.2e-06 58.5 189 25.9
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.2e-06 58.5 189 27.0
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 2.9e-06 58.2 185 24.3
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.9e-06 58.2 191 27.2
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 3.7e-06 57.8 67 44.8
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.7e-06 57.8 185 24.3
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 6.4e-06 57.0 239 26.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.4e-06 57.0 185 25.9
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 8.3e-06 56.6 189 25.9


User provided reference genes

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