Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0348331 Rosa chinensis HOM05D000005 ORTHO05D000012 7.0e-80 300.4 139 100.0
FAN06G4048 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.8e-42 174.5 140 65.0
FvH4_7g10510 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-33 146.7 138 55.8
RcHm_v2.0_Chr1g0348371 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-24 115.5 141 45.4
RcHm_v2.0_Chr1g0348311 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-19 100.1 90 50.0
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-18 96.7 75 56.0
RcHm_v2.0_Chr1g0348361 Rosa chinensis HOM05D000005 ORTHO05D000012 3.4e-18 95.5 90 48.9
FvH4_7g10750 Fragaria vesca HOM05D000005 ORTHO05D000012 2.9e-17 92.4 74 51.4
FAN03G1873 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-17 92.4 74 51.4
FAN06G2906 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-17 92.4 74 51.4
FvH4_2g17350 Fragaria vesca HOM05D000005 ORTHO05D000012 3.8e-17 92.0 99 45.5
FAN24G1899 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.8e-17 92.0 99 45.5
RcHm_v2.0_Chr6g0281981 Rosa chinensis HOM05D000005 ORTHO05D000012 6.4e-17 91.3 99 48.5
FAN27G3393 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-16 90.1 99 44.4
FAN15G2828 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.4e-16 89.4 99 44.4
MD05G1140100 Malus domestica HOM05D000005 ORTHO05D000012 3.2e-16 89.0 84 50.0
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 3.2e-16 89.0 82 48.8
FAN27G2335 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-16 88.6 99 43.4
MD05G1152200 Malus domestica HOM05D000005 ORTHO05D000012 4.2e-16 88.6 80 50.0
RcHm_v2.0_Chr1g0348381 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-16 88.6 74 59.5
RcHm_v2.0_Chr1g0348411 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-16 88.6 74 59.5
RcHm_v2.0_Chr1g0348421 Rosa chinensis HOM05D000005 ORTHO05D000012 5.4e-16 88.2 74 56.8
RcHm_v2.0_Chr1g0348431 Rosa chinensis HOM05D000005 ORTHO05D000012 5.4e-16 88.2 74 56.8
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 9.3e-16 87.4 75 52.0
Dinv38457 Davidia involucrata HOM05D010983 ORTHO05D000012 1.2e-15 87.0 79 49.4
FAN10G1219 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.1e-15 86.3 108 40.7
MD08G1020800 Malus domestica HOM05D000005 ORTHO05D000012 2.1e-15 86.3 86 48.8
Dinv38455 Davidia involucrata HOM05D000005 ORTHO05D000012 3.5e-15 85.5 106 39.6
FvH4_2g17330 Fragaria vesca HOM05D000005 ORTHO05D000012 3.5e-15 85.5 98 43.9
Prupe.2G135700 Prunus persica HOM05D000005 ORTHO05D000012 3.5e-15 85.5 70 58.6
Dinv00400 Davidia involucrata HOM05D000005 ORTHO05D000012 4.6e-15 85.1 76 53.9
FvH4_7g10520 Fragaria vesca HOM05D000005 ORTHO05D000012 3.0e-14 82.4 74 52.7
MD08G1020500 Malus domestica HOM05D000005 ORTHO05D000012 3.0e-14 82.4 84 46.4
MD07G1102200 Malus domestica HOM05D000005 ORTHO05D000012 3.9e-14 82.0 78 50.0
Prupe.2G127100 Prunus persica HOM05D000005 ORTHO05D000012 3.9e-14 82.0 81 48.1
Prupe.8G185300 Prunus persica HOM05D000005 ORTHO05D000012 3.9e-14 82.0 97 41.2
MD07G1103200 Malus domestica HOM05D000005 ORTHO05D000012 6.6e-14 81.3 76 52.6
FAN03G2198 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.7e-14 80.9 74 51.4
Prupe.2G126400 Prunus persica HOM05D000005 ORTHO05D000012 8.7e-14 80.9 72 54.2
MD08G1019200 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-13 80.1 85 47.1
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 2.5e-13 79.3 75 46.7
MD04G1010700 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-13 79.3 81 46.9
Prupe.2G126900 Prunus persica HOM05D000005 ORTHO05D000012 5.6e-13 78.2 77 51.9
RcHm_v2.0_Chr1g0346831 Rosa chinensis HOM05D000005 ORTHO05D000012 5.6e-13 78.2 77 45.5
Dinv38448 Davidia involucrata HOM05D000005 ORTHO05D000012 7.3e-13 77.8 75 46.7
MD08G1018200 Malus domestica HOM05D000005 ORTHO05D000012 7.3e-13 77.8 86 45.3
MD08G1019400 Malus domestica HOM05D000005 ORTHO05D000012 7.3e-13 77.8 133 35.3
Dinv38462 Davidia involucrata HOM05D000005 ORTHO05D000012 1.3e-12 77.0 76 47.4
MD15G1416500 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-12 77.0 77 46.8
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-12 76.6 70 51.4
MD02G1302100 Malus domestica HOM05D000005 ORTHO05D000012 2.8e-12 75.9 73 46.6
RcHm_v2.0_Chr1g0346891 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-12 75.9 93 40.9
Dinv00401 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-12 75.5 76 46.1
Dinv29690 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-12 75.5 76 46.1
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-12 75.5 83 42.2
Prupe.2G126100 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-12 75.1 76 51.3
Prupe.8G185200 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-12 75.1 82 43.9
Dinv29687 Davidia involucrata HOM05D000005 ORTHO05D000012 6.2e-12 74.7 81 46.9
Dinv38452 Davidia involucrata HOM05D000005 ORTHO05D000012 6.2e-12 74.7 69 46.4
Lj3C725T19 Lonicera japonica HOM05D000005 ORTHO05D000012 6.2e-12 74.7 81 45.7
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 1.1e-11 73.9 79 45.6
MD07G1101700 Malus domestica HOM05D000005 ORTHO05D000012 2.4e-11 72.8 78 47.4
Dinv38460 Davidia involucrata HOM05D000005 ORTHO05D000012 3.1e-11 72.4 120 37.5
CSS0049718 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.0e-11 72.0 126 33.3
Dinv29649 Davidia involucrata HOM05D000005 ORTHO05D000012 4.0e-11 72.0 75 44.0
Dinv38447 Davidia involucrata HOM05D000005 ORTHO05D000012 4.0e-11 72.0 77 46.8
Prupe.2G121000 Prunus persica HOM05D000005 ORTHO05D000012 4.0e-11 72.0 73 47.9
Prupe.2G126800 Prunus persica HOM05D000005 ORTHO05D000012 4.0e-11 72.0 71 49.3
Prupe.6G083400 Prunus persica HOM05D000005 ORTHO05D000012 5.3e-11 71.6 94 41.5
CSS0040509 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 6.9e-11 71.2 124 36.3
CSS0000854 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.2e-10 70.5 110 37.3
Prupe.6G083200 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-10 70.5 71 47.9
RcHm_v2.0_Chr6g0281951 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-10 70.5 45 64.4
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.5e-10 70.1 75 44.0
Prupe.2G126200 Prunus persica HOM05D000005 ORTHO05D000012 2.6e-10 69.3 74 48.6
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 2.6e-10 69.3 78 42.3
Prupe.2G126700 Prunus persica HOM05D000005 ORTHO05D000012 3.4e-10 68.9 74 47.3
Sopen01g045300 Solanum pennellii HOM05D000005 ORTHO05D000012 3.4e-10 68.9 75 44.0
Dinv38451 Davidia involucrata HOM05D000005 ORTHO05D000012 5.8e-10 68.2 72 41.7
MD08G1020200 Malus domestica HOM05D000005 ORTHO05D000012 5.8e-10 68.2 39 66.7
Peaxi162Scf01000g00019 Petunia axillaris HOM05D000005 ORTHO05D000012 1.7e-09 66.6 75 41.3
PGSC0003DMG400013098 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.7e-09 66.6 75 42.7
vmacro01620 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.7e-09 66.6 74 43.2
vmacro23186 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.7e-09 66.6 74 43.2
MD11G1112400 Malus domestica HOM05D000005 ORTHO05D000012 2.2e-09 66.2 97 40.2
Peaxi162Scf00194g01013 Petunia axillaris HOM05D000005 ORTHO05D000012 2.2e-09 66.2 75 41.3
CSS0034467 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.9e-09 65.9 49 51.0
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.8e-09 65.5 87 41.4
Prupe.6G132100 Prunus persica HOM05D000005 ORTHO05D000012 4.9e-09 65.1 82 42.7
Dinv29640 Davidia involucrata HOM05D000005 ORTHO05D000012 6.4e-09 64.7 72 37.5
Dinv38449 Davidia involucrata HOM05D000005 ORTHO05D000012 6.4e-09 64.7 76 44.7
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.4e-09 64.7 74 41.9
Sc03g0008120 Simmondsia chinensis HOM05D000005 ORTHO05D000012 6.4e-09 64.7 72 40.3
CSS0031862 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.4e-09 64.3 74 40.5
Manes.06G012900 Manihot esculenta HOM05D000005 ORTHO05D000012 8.4e-09 64.3 78 35.9
Prupe.4G260900 Prunus persica HOM05D000005 ORTHO05D000012 8.4e-09 64.3 40 65.0
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 8.4e-09 64.3 90 36.7
vmacro01622 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 8.4e-09 64.3 71 39.4
Nitab4.5_0001085g0170 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.1e-08 63.9 75 40.0
CSS0002987 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.4e-08 63.5 74 41.9
Dinv01685 Davidia involucrata HOM05D000005 ORTHO05D000012 1.4e-08 63.5 81 39.5
Dinv29646 Davidia involucrata HOM05D000005 ORTHO05D000012 1.4e-08 63.5 85 40.0
FvH4_2g20700 Fragaria vesca HOM05D000005 ORTHO05D022599 1.4e-08 63.5 105 33.3
Hma1.2p1_0188F.1_g082485 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 1.4e-08 63.5 79 36.7
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 1.9e-08 63.2 72 41.7
Nitab4.5_0006159g0050 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.9e-08 63.2 73 38.4
CSS0014375 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.4e-08 62.8 74 39.2
CSS0014612 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.2e-08 62.0 72 43.1
Prupe.2G101900 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-08 62.0 76 39.5
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.4e-08 61.6 74 40.5
MD15G1375200 Malus domestica HOM05D000005 ORTHO05D000012 5.4e-08 61.6 73 38.4
Prupe.2G126300 Prunus persica HOM05D000005 ORTHO05D000012 7.1e-08 61.2 73 42.5
CSS0004944 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.2e-07 60.5 69 46.4
CAN.G1372.3 Capsicum annuum HOM05D000005 ORTHO05D000012 1.6e-07 60.1 75 37.3
Prupe.2G126600 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-07 60.1 73 42.5
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 2.1e-07 59.7 75 36.0
CSS0037441 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.5e-07 58.9 66 40.9
FAN15G0869 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-07 58.9 91 31.9
Nitab4.5_0001085g0160 Nicotiana tabacum HOM05D000005 ORTHO05D000012 3.5e-07 58.9 77 36.4
Peaxi162Scf00000g00029 Petunia axillaris HOM05D000005 ORTHO05D000012 3.5e-07 58.9 94 37.2
MD07G1079200 Malus domestica HOM05D000005 ORTHO05D000012 6.0e-07 58.2 93 30.1
MD17G1277700 Malus domestica HOM05D000005 ORTHO05D000012 6.0e-07 58.2 91 34.1
Solyc01g113620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 6.0e-07 58.2 62 43.5
Sopen02g010550 Solanum pennellii HOM05D000005 ORTHO05D000012 6.0e-07 58.2 78 38.5
MD07G1079400 Malus domestica HOM05D000005 ORTHO05D000012 7.9e-07 57.8 87 33.3
Solyc02g032200.4 Solanum lycopersicum HOM05D000005 ORTHO05D000012 7.9e-07 57.8 75 38.7
Dinv38461 Davidia involucrata HOM05D000005 ORTHO05D000012 1.0e-06 57.4 35 60.0
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 1.0e-06 57.4 89 36.0
PGSC0003DMG400018256 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.0e-06 57.4 77 39.0
Manes.11G061000 Manihot esculenta HOM05D000005 ORTHO05D000012 1.3e-06 57.0 37 51.4
PGSC0003DMG400018216 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.3e-06 57.0 75 34.7
CSS0022340 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.7e-06 56.6 86 36.0
FAN20G0848 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-06 56.6 91 30.8
FAN24G3126 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-06 56.6 91 30.8
Nitab4.5_0006159g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.7e-06 56.6 75 36.0
Prupe.3G130900 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-06 56.6 91 30.8
vmacro04573 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 2.3e-06 56.2 80 32.5
FAN24G1486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-06 55.8 89 34.8
Hma1.2p1_0812F.1_g222290 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 3.0e-06 55.8 85 37.6
Sopen01g045250 Solanum pennellii HOM05D000005 ORTHO05D000012 3.0e-06 55.8 78 37.2
CAN.G1379.4 Capsicum annuum HOM05D000005 ORTHO05D000012 5.1e-06 55.1 78 38.5
Lsat_1_v5_gn_7_44840 Lactuca sativa HOM05D000005 ORTHO05D000012 5.1e-06 55.1 66 37.9
Nitab4.5_0013216g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 5.1e-06 55.1 38 55.3
Peaxi162Scf03024g00007 Petunia axillaris HOM05D000005 ORTHO05D000012 5.1e-06 55.1 38 55.3
Prupe.3G010300 Prunus persica HOM05D000005 ORTHO05D000012 5.1e-06 55.1 91 31.9
CAN.G1076.17 Capsicum annuum HOM05D000005 ORTHO05D000012 6.6e-06 54.7 38 55.3
FAN27G2507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-06 54.7 91 30.8
Nitab4.5_0000288g0100 Nicotiana tabacum HOM05D000005 ORTHO05D000012 6.6e-06 54.7 87 34.5
Sopen01g044060 Solanum pennellii HOM05D000005 ORTHO05D000012 6.6e-06 54.7 38 55.3
Prupe.3G130800 Prunus persica HOM05D000005 ORTHO05D000012 8.7e-06 54.3 91 29.7
Solyc01g102850.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 8.7e-06 54.3 78 35.9


User provided reference genes

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