Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0347731 Rosa chinensis HOM05D003190 ORTHO05D003745 1.2e-21 105.5 51 100.0
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 4.4e-08 60.5 35 77.1
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 5.8e-08 60.1 35 74.3
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 5.8e-08 60.1 29 86.2
MD07G1106500 Malus domestica HOM05D003190 ORTHO05D003745 7.6e-08 59.7 28 89.3
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 7.6e-08 59.7 36 69.4
FAN03G0648 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.3e-07 58.9 35 74.3
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.3e-07 58.9 35 74.3
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.3e-07 58.9 35 74.3
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 1.3e-07 58.9 30 80.0
Nitab4.5_0004620g0020 Nicotiana tabacum HOM05D003190 ORTHO05D003745 1.3e-07 58.9 36 69.4
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.2e-07 58.2 35 71.4
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 3.8e-07 57.4 27 88.9
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 4.9e-07 57.0 29 82.8
FAN06G3948 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.9e-07 57.0 35 71.4
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 4.9e-07 57.0 28 85.7
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 4.9e-07 57.0 28 85.7
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 6.4e-07 56.6 30 73.3
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 6.4e-07 56.6 27 85.2
Peaxi162Scf00103g00518 Petunia axillaris HOM05D003190 ORTHO05D003745 6.4e-07 56.6 30 76.7
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 8.4e-07 56.2 31 71.0
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 8.4e-07 56.2 41 63.4
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 8.4e-07 56.2 27 85.2
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 8.4e-07 56.2 27 85.2
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 8.4e-07 56.2 35 65.7
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 8.4e-07 56.2 29 79.3
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 8.4e-07 56.2 35 68.6
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 1.1e-06 55.8 35 68.6
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 1.1e-06 55.8 35 65.7
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 1.1e-06 55.8 31 74.2
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 1.4e-06 55.5 26 88.5
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.4e-06 55.5 35 65.7
COL.COLO4_12413 Corchorus olitorius HOM05D003190 ORTHO05D003745 1.4e-06 55.5 27 81.5
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.4e-06 55.5 27 81.5
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.4e-06 55.5 27 81.5
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 1.4e-06 55.5 35 68.6
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 1.4e-06 55.5 35 68.6
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 1.4e-06 55.5 36 63.9
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 1.9e-06 55.1 35 68.6
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 1.9e-06 55.1 28 78.6
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 1.9e-06 55.1 30 73.3
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 1.9e-06 55.1 37 64.9
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 1.9e-06 55.1 35 68.6
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 1.9e-06 55.1 31 71.0
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.9e-06 55.1 35 68.6
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 2.4e-06 54.7 27 77.8
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 2.4e-06 54.7 35 68.6
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 2.4e-06 54.7 35 68.6
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 2.4e-06 54.7 35 68.6
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.4e-06 54.7 28 78.6
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 2.4e-06 54.7 28 78.6
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 2.4e-06 54.7 26 88.5
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 62.9
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 65.7
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 3.2e-06 54.3 34 70.6
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 65.7
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 3.2e-06 54.3 38 57.9
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 65.7
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 65.7
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 3.2e-06 54.3 26 80.8
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 3.2e-06 54.3 34 70.6
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 3.2e-06 54.3 29 75.9
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 3.2e-06 54.3 35 62.9
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.2e-06 53.9 35 65.7
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.2e-06 53.9 35 65.7
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 4.2e-06 53.9 27 81.5
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 4.2e-06 53.9 27 81.5
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 4.2e-06 53.9 26 84.6
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 4.2e-06 53.9 35 62.9
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 5.4e-06 53.5 26 84.6
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 5.4e-06 53.5 26 84.6
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 5.4e-06 53.5 26 84.6
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 5.4e-06 53.5 35 62.9
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 5.4e-06 53.5 27 77.8
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 5.4e-06 53.5 35 62.9
FAN18G2349 Fragaria x ananassa HOM05D003190 ORTHO05D003745 5.4e-06 53.5 35 62.9
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 5.4e-06 53.5 36 58.3
MBI04_g07222_MAGBIO Magnolia biondii HOM05D003190 ORTHO05D003745 5.4e-06 53.5 28 75.0
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 5.4e-06 53.5 28 71.4
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 5.4e-06 53.5 26 80.8
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 5.4e-06 53.5 27 81.5
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 7.1e-06 53.1 34 67.6
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 7.1e-06 53.1 35 60.0
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 7.1e-06 53.1 34 67.6
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 7.1e-06 53.1 35 62.9
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 7.1e-06 53.1 26 80.8
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 7.1e-06 53.1 26 80.8
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 7.1e-06 53.1 34 64.7
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 7.1e-06 53.1 38 57.9
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 7.1e-06 53.1 34 70.6
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 7.1e-06 53.1 29 69.0
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 7.1e-06 53.1 26 84.6
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 7.1e-06 53.1 35 62.9
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 9.3e-06 52.8 27 77.8
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 9.3e-06 52.8 29 65.5
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 9.3e-06 52.8 27 77.8
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 9.3e-06 52.8 35 62.9
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 9.3e-06 52.8 35 68.6
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 9.3e-06 52.8 35 62.9
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 9.3e-06 52.8 26 84.6


User provided reference genes

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