Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 3.5e-46 188.0 98 100.0
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 1.8e-29 132.5 82 82.9
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.5e-23 112.8 90 65.6
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 5.5e-23 110.9 91 65.9
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 7.2e-23 110.5 84 65.5
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 9.4e-23 110.2 90 64.4
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 1.2e-22 109.8 91 65.9
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.2e-22 109.8 91 65.9
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 2.1e-22 109.0 91 59.3
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 4.7e-22 107.8 81 63.0
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.7e-22 107.8 87 59.8
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 1.8e-21 105.9 87 58.6
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 3.0e-21 105.1 87 54.0
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 5.2e-21 104.4 87 57.5
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 6.7e-21 104.0 78 61.5
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 1.1e-20 103.2 87 51.7
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.1e-20 103.2 85 58.8
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 2.6e-20 102.1 87 55.2
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 2.6e-20 102.1 87 54.0
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 3.3e-20 101.7 95 53.7
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 4.4e-20 101.3 78 60.3
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 7.4e-20 100.5 79 60.8
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 7.4e-20 100.5 79 59.5
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 2.2e-19 99.0 85 57.6
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 2.2e-19 99.0 80 57.5
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 3.7e-19 98.2 87 52.9
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 4.8e-19 97.8 86 48.8
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 4.8e-19 97.8 86 48.8
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 4.8e-19 97.8 87 57.5
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 4.8e-19 97.8 86 50.0
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 1.1e-18 96.7 83 55.4
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 1.1e-18 96.7 86 54.7
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.1e-18 96.7 79 58.2
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.1e-18 96.7 78 57.7
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.4e-18 96.3 86 47.7
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 1.4e-18 96.3 83 55.4
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 1.4e-18 96.3 92 53.3
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 1.8e-18 95.9 91 47.3
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 1.8e-18 95.9 91 47.3
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.8e-18 95.9 80 52.5
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 2.4e-18 95.5 93 49.5
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 3.1e-18 95.1 93 49.5
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 4.1e-18 94.7 86 47.7
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 4.1e-18 94.7 86 46.5
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 7.0e-18 94.0 88 48.9
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 7.0e-18 94.0 88 48.9
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 7.0e-18 94.0 93 47.3
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 9.1e-18 93.6 88 48.9
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 9.1e-18 93.6 86 46.5
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 9.1e-18 93.6 77 54.5
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 1.2e-17 93.2 92 50.0
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 1.6e-17 92.8 85 52.9
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 2.0e-17 92.4 89 48.3
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 2.0e-17 92.4 86 47.7
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 2.0e-17 92.4 92 45.7
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 3.5e-17 91.7 81 49.4
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 3.5e-17 91.7 82 53.7
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 4.5e-17 91.3 83 54.2
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 5.9e-17 90.9 88 43.2
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 5.9e-17 90.9 88 53.4
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 5.9e-17 90.9 92 47.8
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 5.9e-17 90.9 92 47.8
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 7.7e-17 90.5 81 48.1
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 7.7e-17 90.5 80 52.5
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 1.0e-16 90.1 86 43.0
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.0e-16 90.1 75 50.7
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.0e-16 90.1 75 50.7
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 1.0e-16 90.1 79 54.4
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 1.0e-16 90.1 97 42.3
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 1.3e-16 89.7 94 48.9
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 1.3e-16 89.7 93 45.2
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.7e-16 89.4 81 48.1
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 2.2e-16 89.0 79 54.4
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 2.9e-16 88.6 82 48.8
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 3.8e-16 88.2 77 49.4
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 3.8e-16 88.2 89 43.8
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 3.8e-16 88.2 88 47.7
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 5.0e-16 87.8 84 48.8
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 5.0e-16 87.8 86 45.3
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 5.0e-16 87.8 86 45.3
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 6.5e-16 87.4 81 51.9
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 8.5e-16 87.0 88 47.7
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 1.1e-15 86.7 89 49.4
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.5e-15 86.3 88 46.6
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 1.5e-15 86.3 78 50.0
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 1.9e-15 85.9 76 51.3
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 1.9e-15 85.9 87 47.1
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 4.2e-15 84.7 80 46.2
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 4.2e-15 84.7 82 50.0
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 5.5e-15 84.3 87 52.9
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 1.2e-14 83.2 80 48.8
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.6e-14 82.8 80 50.0
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 2.1e-14 82.4 76 46.1
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 2.7e-14 82.0 82 47.6
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 3.6e-14 81.6 82 46.3
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 4.7e-14 81.3 82 46.3
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.0e-13 80.1 85 45.9
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.8e-13 79.3 66 51.5
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.8e-13 79.3 97 43.3
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 3.0e-13 78.6 48 79.2
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 3.0e-13 78.6 48 79.2
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 5.2e-13 77.8 68 57.4
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 5.2e-13 77.8 80 47.5
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 6.8e-13 77.4 86 43.0
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 8.8e-13 77.0 61 55.7
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 2.0e-12 75.9 79 43.0
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.7e-11 72.8 77 51.9
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 2.8e-11 72.0 79 45.6
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 3.7e-11 71.6 53 52.8
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 4.8e-11 71.2 77 44.2
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 4.1e-10 68.2 87 39.1
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 5.4e-10 67.8 87 40.2
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 2.5e-07 58.9 53 54.7


User provided reference genes

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