Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 1.1e-235 819.7 442 100.0
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 8.7e-209 730.3 442 90.7
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 2.2e-196 689.1 444 82.2
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.6e-162 575.5 443 69.8
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 6.1e-154 548.1 443 66.4
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 9.8e-120 434.5 247 86.6
FvH4_7g11550 Fragaria vesca HOM05D000005 ORTHO05D015660 1.5e-83 314.3 229 79.9
FAN10G2207 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.6e-53 213.0 139 79.1
RcHm_v2.0_Chr3g0477491 Rosa chinensis HOM05D009879 ORTHO05D009647 7.7e-48 195.7 186 51.6
RcHm_v2.0_Chr1g0381361 Rosa chinensis HOM05D016653 ORTHO05D009647 5.0e-47 193.0 191 46.6
FAN10G0934 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-46 189.9 106 90.6
RcHm_v2.0_Chr5g0040531 Rosa chinensis HOM05D009879 ORTHO05D009647 2.7e-45 187.2 198 44.4
RcHm_v2.0_Chr5g0007651 Rosa chinensis HOM05D009879 ORTHO05D009647 6.1e-45 186.0 191 45.0
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.5e-40 170.2 168 49.4
FAN07G2263 Fragaria x ananassa HOM05D011706 ORTHO05D009647 1.0e-39 168.7 186 47.3
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 1.7e-39 167.9 159 50.9
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.2e-38 163.7 154 51.9
FAN15G2881 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.5e-32 143.3 133 51.9
FAN21G0826 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.5e-30 138.3 202 39.6
FAN18G0028 Fragaria x ananassa HOM05D009879 ORTHO05D009647 6.8e-28 129.4 112 54.5
FvH4_6g23072 Fragaria vesca HOM05D009879 ORTHO05D009647 1.3e-26 125.2 106 54.7
RcHm_v2.0_Chr5g0025151 Rosa chinensis HOM05D008485 ORTHO05D009647 1.5e-22 111.7 262 28.6
FAN10G3470 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.2e-21 108.6 68 77.9
FvH4_7g02471 Fragaria vesca HOM05D009879 ORTHO05D009647 6.1e-21 106.3 171 36.3
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.8e-20 104.8 246 28.0
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.8e-20 104.8 246 28.0
RcHm_v2.0_Chr5g0029021 Rosa chinensis HOM05D008485 ORTHO05D009647 1.8e-20 104.8 206 33.0
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.2e-19 102.1 246 27.6
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.2e-19 102.1 246 27.6
FvH4_7g02601 Fragaria vesca HOM05D009879 ORTHO05D009647 2.6e-19 100.9 161 36.6
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 3.4e-19 100.5 177 33.3
RcHm_v2.0_Chr5g0070861 Rosa chinensis HOM05D008485 ORTHO05D009647 4.4e-19 100.1 206 30.1
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 1.7e-18 98.2 100 57.0
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 4.9e-18 96.7 177 32.2
RcHm_v2.0_Chr5g0036581 Rosa chinensis HOM05D008485 ORTHO05D009647 1.4e-17 95.1 207 30.0
RcHm_v2.0_Chr2g0115791 Rosa chinensis HOM05D009879 ORTHO05D009647 1.7e-15 88.2 82 50.0
Sed0003641 Sechium edule HOM05D000034 ORTHO05D000037 2.5e-14 84.3 95 41.1
ClCG09G017130 Citrullus lanatus HOM05D007209 ORTHO05D000921 3.3e-14 84.0 121 43.8
ClCG03G011480 Citrullus lanatus HOM05D007209 ORTHO05D000921 4.3e-14 83.6 93 45.2
Atru.chr9.7 Acer truncatum HOM05D008705 ORTHO05D000669 5.6e-14 83.2 169 28.4
QL05p075545 Quercus lobata HOM05D007798 ORTHO05D009882 5.6e-14 83.2 175 30.3
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 7.2e-14 82.8 192 30.2
ClCG03G008640 Citrullus lanatus HOM05D007209 ORTHO05D000921 1.6e-13 81.6 117 41.9
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.1e-13 81.3 97 42.3
MELO3C035609.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.8e-13 80.9 105 40.0
FAN10G1422 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.6e-13 80.5 144 30.6
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 6.1e-13 79.7 204 26.5
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 6.1e-13 79.7 246 25.2
MELO3C033912.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.0e-12 79.0 97 41.2
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.0e-12 79.0 177 29.9
FAN13G0756 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.0e-12 77.4 160 30.0
FAN15G0639 Fragaria x ananassa HOM05D008705 ORTHO05D000669 3.0e-12 77.4 79 50.6
ClCG07G007780 Citrullus lanatus HOM05D007209 ORTHO05D000921 4.0e-12 77.0 124 40.3
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 4.0e-12 77.0 162 31.5
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 4.0e-12 77.0 170 32.4
MELO3C029648.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.2e-12 76.6 97 41.2
MELO3C031338.2 Cucumis melo HOM05D007209 ORTHO05D000921 8.9e-12 75.9 97 41.2
CsaV3_3G041440 Cucumis sativus L. HOM05D007209 ORTHO05D000921 1.5e-11 75.1 119 39.5
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.5e-11 75.1 196 25.0
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 1.5e-11 75.1 162 30.9
RcHm_v2.0_Chr3g0469161 Rosa chinensis HOM05D009879 ORTHO05D009647 2.0e-11 74.7 61 47.5
MELO3C034280.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.7e-11 73.2 131 34.4
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.7e-11 73.2 177 29.4
MBI19_g30599_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.7e-11 73.2 214 29.0
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.5e-11 72.8 174 30.5
MELO3C030185.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.3e-10 72.0 147 32.7
ClCG10G015090 Citrullus lanatus HOM05D007209 ORTHO05D000921 1.7e-10 71.6 118 36.4
MELO3C035563.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.7e-10 71.6 131 35.1
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 2.2e-10 71.2 204 30.4
MELO3C009866.2 Cucumis melo HOM05D007209 ORTHO05D000921 3.7e-10 70.5 119 37.8
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-10 70.1 173 29.5
RcHm_v2.0_Chr2g0094421 Rosa chinensis HOM05D008485 ORTHO05D009647 1.1e-09 68.9 109 37.6
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-09 68.6 177 29.9
Dinv32776 Davidia involucrata HOM05D007209 ORTHO05D000921 1.8e-09 68.2 92 40.2
AUR62040593 Chenopodium quinoa HOM05D007209 ORTHO05D000921 3.2e-09 67.4 89 40.4
FvH4_5g24831 Fragaria vesca HOM05D009879 ORTHO05D009647 4.1e-09 67.0 72 44.4
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.1e-09 67.0 183 29.5
CSS0034332 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 5.4e-09 66.6 192 30.7
AUR62024947 Chenopodium quinoa HOM05D007209 ORTHO05D000921 5.4e-09 66.6 89 40.4
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 5.4e-09 66.6 175 32.0
CSS0029753 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 7.0e-09 66.2 192 30.2
MELO3C028998.2 Cucumis melo HOM05D007209 ORTHO05D000921 7.0e-09 66.2 125 35.2
CSS0004685 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 9.2e-09 65.9 192 30.7
CSS0008205 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 9.2e-09 65.9 192 30.7
AUR62037673 Chenopodium quinoa HOM05D007209 ORTHO05D000921 9.2e-09 65.9 89 41.6
RcHm_v2.0_Chr1g0345631 Rosa chinensis HOM05D008705 ORTHO05D000669 9.2e-09 65.9 118 32.2
CSS0033268 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 1.6e-08 65.1 197 29.9
Hma1.2p1_0805F.1_g221293 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 1.6e-08 65.1 89 39.3
Hma1.2p1_0805F.1_g221299 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 1.6e-08 65.1 89 39.3
PSO384G0881 Papaver somniferum HOM05D017761 ORTHO05D000669 1.6e-08 65.1 151 30.5
CSS0047376 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 2.0e-08 64.7 192 30.7
Dinv13268 Davidia involucrata HOM05D000097 ORTHO05D000041 3.5e-08 63.9 92 39.1
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 4.6e-08 63.5 115 27.8
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.6e-08 63.5 226 25.7
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.6e-08 63.5 222 25.2
RcHm_v2.0_Chr4g0403221 Rosa chinensis HOM05D008485 ORTHO05D009647 4.6e-08 63.5 107 32.7
RcHm_v2.0_Chr4g0434301 Rosa chinensis HOM05D008485 ORTHO05D009647 4.6e-08 63.5 107 32.7
Sed0024451 Sechium edule HOM05D007209 ORTHO05D000921 4.6e-08 63.5 120 33.3
Actinidia24178 Actinidia chinensis HOM05D013777 ORTHO05D000921 5.9e-08 63.2 137 32.1
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.9e-08 63.2 172 26.7
MELO3C030714.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.0e-07 62.4 80 41.2
CSS0021747 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 1.3e-07 62.0 192 30.2
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 1.3e-07 62.0 153 30.1
MBI18_g20995_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-07 62.0 130 33.1
AUR62037953 Chenopodium quinoa HOM05D007209 ORTHO05D000921 1.7e-07 61.6 107 34.6
Dinv20825 Davidia involucrata HOM05D007209 ORTHO05D000921 1.7e-07 61.6 92 38.0
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 1.7e-07 61.6 163 26.4
Sed0011521 Sechium edule HOM05D007209 ORTHO05D000921 2.3e-07 61.2 118 36.4
CSS0045394 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.0e-07 60.8 174 30.5
AUR62042144 Chenopodium quinoa HOM05D007209 ORTHO05D000921 3.0e-07 60.8 85 38.8
PSO675G8190 Papaver somniferum HOM05D017761 ORTHO05D000669 3.9e-07 60.5 110 30.9
vmacro18043 Vaccinium macrocarpon HOM05D007209 ORTHO05D000005 3.9e-07 60.5 119 34.5
PSO675G3989 Papaver somniferum HOM05D000791 ORTHO05D000669 5.0e-07 60.1 110 30.9
Rhsim12G0067000 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.0e-07 60.1 136 30.9
CSS0022173 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 6.6e-07 59.7 174 29.9
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.6e-07 59.7 222 25.2
Rhsim03G0151700 Rhododendron simsii HOM05D000114 ORTHO05D000037 6.6e-07 59.7 114 33.3
Dinv01169 Davidia involucrata HOM05D007209 ORTHO05D000921 8.6e-07 59.3 92 35.9
MBI11_g22671_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.6e-07 59.3 148 29.7
Sed0007988 Sechium edule HOM05D007209 ORTHO05D000921 8.6e-07 59.3 63 44.4
Sed0016419 Sechium edule HOM05D007209 ORTHO05D000921 8.6e-07 59.3 45 51.1
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 8.6e-07 59.3 149 32.2
CSS0031004 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 1.1e-06 58.9 163 31.3
LjContig00141g0014815 Lotus japonicus HOM05D007209 ORTHO05D000921 1.1e-06 58.9 115 34.8
FAN17G2617 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.5e-06 58.5 117 31.6
Lj2g0013227 Lotus japonicus HOM05D007209 ORTHO05D000921 1.5e-06 58.5 115 33.9
CSS0003759 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 1.9e-06 58.2 174 29.9
MBI10_g06414_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-06 58.2 111 31.5
MBI19_g46209_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-06 58.2 173 25.4
vmacro00531 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 1.9e-06 58.2 178 26.4
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.5e-06 57.8 126 29.4
Dinv05467 Davidia involucrata HOM05D007209 ORTHO05D000921 3.3e-06 57.4 92 37.0
Dinv23928 Davidia involucrata HOM05D007209 ORTHO05D000921 3.3e-06 57.4 92 33.7
Rhsim03G0129100 Rhododendron simsii HOM05D007209 ORTHO05D000921 3.3e-06 57.4 126 28.6
Aqoxy4G01021 Aquilegia oxysepala HOM05D000791 ORTHO05D000669 4.3e-06 57.0 164 26.8
MELO3C032092.2 Cucumis melo HOM05D007209 ORTHO05D000921 4.3e-06 57.0 121 35.5
Lj1g0016199 Lotus japonicus HOM05D007209 ORTHO05D000921 4.3e-06 57.0 125 31.2
Hma1.2p1_0309F.1_g120595 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 5.6e-06 56.6 84 40.5
MBI08_g19110_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.6e-06 56.6 181 26.0
MBI19_g18851_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.6e-06 56.6 112 31.2
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 5.6e-06 56.6 130 30.0
Actinidia22604 Actinidia chinensis HOM05D013777 ORTHO05D009647 7.3e-06 56.2 66 40.9
MELO3C034759.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.3e-06 56.2 166 27.7
MBI14_g44240_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.3e-06 56.2 111 32.4
CSS0038208 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 9.5e-06 55.8 173 27.2
Dinv27628 Davidia involucrata HOM05D007209 ORTHO05D000921 9.5e-06 55.8 130 30.8
MBI09_g30141_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.5e-06 55.8 218 26.1
MBI11_g23002_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.5e-06 55.8 112 29.5


User provided reference genes

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