Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 1.0e-76 290.0 150 100.0
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 9.5e-75 283.5 150 97.3
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 6.2e-66 254.2 140 92.9
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 2.6e-64 248.8 142 88.7
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.2e-63 245.7 140 89.3
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.9e-60 235.0 140 82.1
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 2.5e-59 232.3 138 84.1
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 2.1e-58 229.2 138 80.4
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 3.6e-58 228.4 140 78.6
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 8.1e-58 227.3 138 80.4
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 8.1e-58 227.3 138 81.9
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 1.1e-57 226.9 140 80.0
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 1.4e-57 226.5 140 79.3
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.8e-57 226.1 138 81.9
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 2.4e-57 225.7 138 79.7
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 2.4e-57 225.7 138 79.7
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 5.2e-57 224.6 141 76.6
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 6.8e-57 224.2 141 78.7
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 8.9e-57 223.8 141 77.3
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 8.9e-57 223.8 140 79.3
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.2e-56 223.4 142 74.6
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.2e-56 223.4 138 79.7
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.0e-56 222.6 138 79.0
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 2.0e-56 222.6 138 78.3
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 2.0e-56 222.6 138 77.5
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 3.4e-56 221.9 160 70.6
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 5.8e-56 221.1 138 76.8
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 5.8e-56 221.1 138 77.5
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 7.6e-56 220.7 138 77.5
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 7.6e-56 220.7 138 75.4
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 7.6e-56 220.7 138 74.6
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.7e-55 219.5 140 76.4
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.7e-55 219.5 138 77.5
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 2.2e-55 219.2 143 73.4
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 2.2e-55 219.2 138 76.1
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 2.9e-55 218.8 138 78.3
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 2.9e-55 218.8 138 75.4
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.9e-55 218.8 138 76.1
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 2.9e-55 218.8 138 76.8
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 6.4e-55 217.6 140 78.6
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.1e-54 216.9 141 77.3
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 3.2e-54 215.3 138 76.8
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 3.2e-54 215.3 138 74.6
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 5.4e-54 214.5 138 74.6
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 5.4e-54 214.5 138 71.0
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 7.1e-54 214.2 137 74.5
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 7.1e-54 214.2 138 74.6
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-53 213.4 130 80.0
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-53 213.4 130 80.0
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 1.2e-53 213.4 140 72.1
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.6e-53 213.0 140 75.0
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.5e-53 211.8 182 65.4
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 4.6e-53 211.5 139 74.8
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 1.0e-52 210.3 142 71.8
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.3e-52 209.9 142 69.7
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.3e-52 209.9 140 71.4
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.7e-52 209.5 138 73.9
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.7e-52 209.5 140 70.0
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 2.3e-52 209.1 138 73.9
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 3.0e-52 208.8 138 76.1
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 6.6e-52 207.6 138 71.7
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 8.6e-52 207.2 141 68.8
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.1e-51 206.8 135 73.3
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.1e-51 206.8 140 70.0
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 1.1e-51 206.8 130 75.4
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 1.5e-51 206.5 140 70.0
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 4.3e-51 204.9 138 75.4
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.6e-50 203.0 138 73.9
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 1.8e-49 199.5 138 72.5
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 1.2e-48 196.8 138 66.7
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 1.2e-48 196.8 132 71.2
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 1.2e-48 196.8 138 68.8
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 1.5e-48 196.4 138 68.1
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.4e-48 195.3 120 83.3
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 5.8e-48 194.5 138 65.2
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 7.6e-48 194.1 142 72.5
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.2e-47 192.6 138 64.5
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 8.4e-47 190.7 138 63.0
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 8.4e-47 190.7 138 67.4
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 5.4e-46 188.0 138 64.5
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 6.2e-42 174.5 154 60.4
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 5.6e-35 151.4 107 72.0
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 1.1e-33 147.1 83 89.2
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 5.3e-33 144.8 134 56.7
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 7.6e-32 141.0 86 79.1
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 2.9e-31 139.0 89 73.0
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.4e-30 136.7 81 77.8
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 7.1e-30 134.4 167 50.9
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 6.0e-29 131.3 74 90.5
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 6.7e-28 127.9 94 64.9
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.8e-25 119.8 152 46.7
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.0e-20 102.4 135 36.3
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 3.9e-20 102.1 150 44.0
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 5.1e-20 101.7 59 83.1
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 2.8e-18 95.9 60 76.7
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 1.4e-17 93.6 60 76.7
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 8.5e-15 84.3 62 72.6
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 8.5e-15 84.3 148 40.5
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 1.4e-14 83.6 51 80.4
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 7.2e-14 81.3 126 43.7
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 4.6e-13 78.6 40 97.5
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 1.8e-12 76.6 64 59.4
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 3.9e-12 75.5 54 64.8
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 6.7e-12 74.7 141 36.2
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 2.8e-10 69.3 139 38.1
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 3.7e-10 68.9 141 34.8
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 1.4e-09 67.0 46 67.4
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 4.1e-09 65.5 141 33.3
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 6.9e-09 64.7 59 52.5
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.9e-07 59.3 35 80.0
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 5.5e-06 55.1 34 70.6
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 5.5e-06 55.1 34 70.6


User provided reference genes

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