Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.1e-289 999.2 497 100.0
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.9e-259 896.7 512 86.7
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.9e-259 896.7 512 86.7
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.9e-259 896.7 512 86.7
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.6e-256 889.0 512 86.9
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 6.9e-255 883.6 497 87.7
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 7.9e-235 817.0 470 84.7
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 4.8e-232 807.7 494 80.8
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 1.1e-231 806.6 495 80.2
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.7e-229 799.3 495 77.0
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 5.1e-226 787.7 493 77.3
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 2.2e-224 782.3 496 76.2
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.4e-223 779.6 493 76.9
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 6.9e-223 777.3 493 76.1
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 3.4e-222 775.0 495 75.6
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 5.9e-222 774.2 495 76.0
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 7.7e-222 773.9 485 77.1
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 3.2e-220 768.5 495 76.4
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.1e-219 765.8 494 75.7
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 5.1e-218 761.1 494 73.9
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.5e-217 759.6 496 73.0
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.8e-216 755.4 488 74.4
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.1e-215 753.4 496 72.0
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.6e-214 749.6 497 73.8
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 3.5e-214 748.4 438 85.4
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 3.5e-214 748.4 497 73.4
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 7.7e-214 747.3 497 73.4
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 2.2e-213 745.7 491 74.3
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 3.8e-213 745.0 467 77.7
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 3.2e-212 741.9 492 73.0
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 4.2e-212 741.5 490 72.4
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 2.7e-211 738.8 494 73.9
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 8.0e-211 737.3 491 72.5
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.4e-210 736.5 495 73.5
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 1.1e-209 733.4 495 71.7
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.3e-208 729.9 493 73.0
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.7e-208 729.6 432 84.5
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 8.2e-208 727.2 495 71.7
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 1.1e-207 726.9 494 72.7
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 3.1e-207 725.3 491 72.1
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.2e-206 723.4 475 75.4
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 2.7e-206 722.2 492 71.7
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 3.5e-206 721.8 495 71.9
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 7.7e-206 720.7 495 70.3
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.3e-205 719.9 470 75.3
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 2.2e-205 719.2 495 71.3
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.5e-204 716.5 468 73.7
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.0e-202 710.3 457 75.7
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.8e-202 709.5 548 66.6
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 8.8e-202 707.2 548 66.4
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 2.4e-199 699.1 493 69.0
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 9.1e-199 697.2 495 69.5
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 2.7e-198 695.7 493 68.8
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 3.5e-198 695.3 493 68.8
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 5.9e-198 694.5 490 69.2
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 5.9e-198 694.5 494 68.6
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 5.9e-198 694.5 494 68.6
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 5.9e-198 694.5 493 66.9
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 7.7e-198 694.1 495 68.9
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 3.2e-196 688.7 497 69.4
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.6e-195 686.4 493 66.9
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 2.7e-195 685.6 461 73.5
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.7e-195 685.6 496 67.5
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 3.6e-195 685.3 490 69.2
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.8e-191 672.9 494 68.6
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 2.7e-190 669.1 494 67.2
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 1.3e-189 666.8 518 66.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 3.8e-189 665.2 502 66.7
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 5.0e-189 664.8 525 63.8
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.5e-188 663.3 523 65.0
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 3.3e-188 662.1 608 58.6
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.0e-186 657.1 526 62.4
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 1.8e-186 656.4 484 66.3
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 5.7e-185 651.4 483 63.8
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.1e-183 647.1 484 65.7
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.1e-183 647.1 453 69.3
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 1.3e-181 640.2 493 62.3
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.7e-181 639.8 495 65.1
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 6.8e-178 627.9 506 63.8
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 8.9e-178 627.5 411 72.0
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 3.2e-175 619.0 470 67.2
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 7.3e-172 607.8 493 62.3
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 2.1e-171 606.3 494 58.7
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.6e-166 590.1 518 57.5
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 6.0e-166 588.2 394 73.1
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 7.8e-166 587.8 415 70.1
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 5.6e-164 581.6 511 59.9
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.9e-157 558.9 396 69.9
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 2.9e-152 542.7 495 56.0
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 2.9e-152 542.7 484 55.8
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 9.0e-146 521.2 334 76.9
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.5e-145 520.4 484 57.4
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 7.6e-145 518.1 691 45.0
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 9.9e-145 517.7 484 53.5
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 6.4e-144 515.0 531 55.6
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 7.1e-143 511.5 334 77.8
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 1.0e-141 507.7 492 51.2
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.8e-138 496.9 401 64.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.9e-125 452.6 988 33.2
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 3.7e-123 446.0 433 52.4
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 5.9e-121 438.7 468 53.2
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 2.2e-120 436.8 302 72.8
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 2.5e-111 406.8 379 57.8
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 8.5e-104 381.7 499 45.7
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 9.4e-103 378.3 438 51.1
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.7e-100 369.0 201 92.5
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 7.7e-89 332.0 251 66.9
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.0e-82 308.9 201 79.6
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 3.2e-79 300.1 557 35.9
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 2.0e-76 290.8 304 56.6
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.1e-70 270.8 498 36.5
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 5.6e-63 246.1 161 71.4
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 8.0e-62 242.3 183 63.4
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 7.3e-47 192.6 161 64.0
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 7.8e-41 172.6 112 67.9
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 8.6e-40 169.1 117 71.8
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 6.9e-29 132.9 150 46.7
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 2.3e-24 117.9 67 76.1
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 3.3e-23 114.0 80 72.5
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.7e-22 110.5 100 60.0
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.9e-18 98.2 66 74.2
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 6.0e-17 93.2 79 50.6
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.8e-13 81.6 43 83.7
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 7.6e-12 76.3 46 73.9
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 8.4e-11 72.8 81 51.9
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 3.2e-10 70.9 49 65.3


User provided reference genes

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