Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346021 Rosa chinensis HOM05D008133 ORTHO05D009449 1.2e-106 389.8 184 100.0
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 1.0e-46 190.7 170 57.6
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-31 140.6 164 47.0
FvH4_2g04612 Fragaria vesca HOM05D008133 ORTHO05D009449 1.6e-28 130.2 175 40.6
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 4.8e-28 128.6 164 43.9
FAN04G3042 Fragaria x ananassa HOM05D008133 ORTHO05D009449 1.2e-26 124.0 161 43.5
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 2.9e-25 119.4 170 38.8
RcHm_v2.0_Chr2g0115441 Rosa chinensis HOM05D008133 ORTHO05D009449 9.4e-24 114.4 170 40.0
FvH4_2g07841 Fragaria vesca HOM05D008133 ORTHO05D009449 1.2e-23 114.0 118 49.2
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 3.6e-23 112.5 171 40.4
FvH4_4g06793 Fragaria vesca HOM05D000003 ORTHO05D000004 4.6e-23 112.1 163 39.9
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 1.0e-22 110.9 178 37.1
FvH4_2g13581 Fragaria vesca HOM05D000003 ORTHO05D000004 2.3e-22 109.8 109 49.5
Prupe.8G042700 Prunus persica HOM05D000003 ORTHO05D009449 2.3e-22 109.8 180 36.1
FvH4_4g05481 Fragaria vesca HOM05D008133 ORTHO05D009449 3.9e-22 109.0 172 37.2
FvH4_1g23791 Fragaria vesca HOM05D008133 ORTHO05D009449 5.1e-22 108.6 161 39.8
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 1.1e-19 100.9 164 35.4
RcHm_v2.0_Chr4g0398081 Rosa chinensis HOM05D008133 ORTHO05D009449 1.1e-19 100.9 171 36.3
RcHm_v2.0_Chr2g0141951 Rosa chinensis HOM05D000023 ORTHO05D000014 1.8e-19 100.1 121 45.5
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 2.4e-19 99.8 164 36.6
FvH4_3g24291 Fragaria vesca HOM05D008133 ORTHO05D009449 4.1e-19 99.0 146 39.7
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 9.1e-19 97.8 169 33.7
FvH4_6g30670 Fragaria vesca HOM05D021529 ORTHO05D009449 4.5e-18 95.5 182 35.7
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-17 93.2 174 28.2
FvH4_5g33581 Fragaria vesca HOM05D008133 ORTHO05D009449 2.2e-17 93.2 169 33.1
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.1e-16 90.9 156 37.8
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.4e-16 90.5 153 34.0
FvH4_5g31281 Fragaria vesca HOM05D008133 ORTHO05D009449 2.5e-16 89.7 140 36.4
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.2e-16 89.4 158 37.3
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.2e-16 89.4 173 32.4
Lj1g0015022 Lotus japonicus HOM05D000003 ORTHO05D000167 1.2e-15 87.4 177 31.1
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.7e-15 85.5 173 31.2
MD15G1334000 Malus domestica HOM05D002815 ORTHO05D003409 7.9e-15 84.7 160 33.1
Lj2g0023892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.8e-14 83.6 170 30.0
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-13 80.9 164 32.9
Prupe.3G190000 Prunus persica HOM05D008133 ORTHO05D009449 1.5e-13 80.5 123 35.8
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.3e-13 79.3 173 33.5
Prupe.2G049100 Prunus persica HOM05D000003 ORTHO05D000004 1.3e-12 77.4 131 34.4
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.3e-12 77.4 165 32.1
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.2e-12 76.6 172 32.6
FvH4_3g32402 Fragaria vesca HOM05D000002 ORTHO05D000047 4.8e-12 75.5 135 35.6
Prupe.2G022700 Prunus persica HOM05D008133 ORTHO05D009449 4.8e-12 75.5 136 33.1
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.8e-12 75.5 172 32.6
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 8.2e-12 74.7 169 30.8
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.2e-12 74.7 172 32.6
FvH4_4g20431 Fragaria vesca HOM05D011624 ORTHO05D014221 1.1e-11 74.3 143 30.1
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-11 74.3 166 33.1
COL.COLO4_16656 Corchorus olitorius HOM05D013144 ORTHO05D009449 1.4e-11 73.9 169 33.1
RcHm_v2.0_Chr6g0270721 Rosa chinensis HOM05D011824 ORTHO05D009449 2.4e-11 73.2 92 47.8
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 4.1e-11 72.4 179 26.3
PSO339G3052 Papaver somniferum HOM05D000003 ORTHO05D000004 4.1e-11 72.4 157 30.6
PSO421G0243 Papaver somniferum HOM05D003407 ORTHO05D001026 4.1e-11 72.4 169 29.0
Prupe.3G143300 Prunus persica HOM05D008133 ORTHO05D009449 5.3e-11 72.0 168 31.5
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.3e-11 72.0 163 32.5
FAN26G2609 Fragaria x ananassa HOM05D008133 ORTHO05D009449 7.0e-11 71.6 91 39.6
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 7.0e-11 71.6 155 32.3
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 7.0e-11 71.6 170 32.9
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.0e-11 71.6 171 32.7
RcHm_v2.0_Chr5g0040301 Rosa chinensis HOM05D008133 ORTHO05D009449 7.0e-11 71.6 85 44.7
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 9.1e-11 71.2 98 40.8
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 1.6e-10 70.5 158 32.3
PSO339G5018 Papaver somniferum HOM05D000003 ORTHO05D000004 2.6e-10 69.7 157 29.9
COL.COLO4_17377 Corchorus olitorius HOM05D008133 ORTHO05D009449 3.5e-10 69.3 174 28.2
COL.COLO4_18924 Corchorus olitorius HOM05D000003 ORTHO05D009449 4.5e-10 68.9 172 30.2
PSO210G5459 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-10 68.9 157 29.9
RcHm_v2.0_Chr2g0089441 Rosa chinensis HOM05D008133 ORTHO05D009449 5.9e-10 68.6 90 34.4
FvH4_3g10392 Fragaria vesca HOM05D008133 ORTHO05D009449 1.0e-09 67.8 121 34.7
MD17G1165700 Malus domestica HOM05D008133 ORTHO05D009449 1.0e-09 67.8 117 35.0
arahy.Tifrunner.gnm1.ann1.0Y1AJC Arachis hypogaea HOM05D027442 ORTHO05D000167 2.2e-09 66.6 162 28.4
Aqoxy7G01697 Aquilegia oxysepala HOM05D000003 ORTHO05D000283 2.9e-09 66.2 162 28.4
PSO832G3118 Papaver somniferum HOM05D003407 ORTHO05D001026 6.5e-09 65.1 145 32.4
Prupe.1G073500 Prunus persica HOM05D008133 ORTHO05D007254 8.5e-09 64.7 134 29.9
FvH4_6g19041 Fragaria vesca HOM05D027595 ORTHO05D045540 1.5e-08 63.9 66 47.0
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.5e-08 63.9 158 32.3
FvH4_2g30621 Fragaria vesca HOM05D008133 ORTHO05D009449 1.9e-08 63.5 138 30.4
PSO832G3082 Papaver somniferum HOM05D007919 ORTHO05D006738 3.2e-08 62.8 139 29.5
RcHm_v2.0_Chr1g0347191 Rosa chinensis HOM05D000003 ORTHO05D000004 3.2e-08 62.8 100 39.0
FAN13G2528 Fragaria x ananassa HOM05D027595 ORTHO05D009449 4.2e-08 62.4 51 51.0
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 4.2e-08 62.4 171 27.5
COL.COLO4_06385 Corchorus olitorius HOM05D000395 ORTHO05D009449 5.5e-08 62.0 149 27.5
FvH4_6g07963 Fragaria vesca HOM05D008133 ORTHO05D022573 5.5e-08 62.0 114 34.2
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.5e-08 62.0 178 27.5
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 9.4e-08 61.2 159 35.2
RcHm_v2.0_Chr6g0263011 Rosa chinensis HOM05D011824 ORTHO05D017030 9.4e-08 61.2 90 41.1
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.6e-07 60.5 170 30.6
Nn1g00184 Nelumbo nucifera HOM05D016503 ORTHO05D013616 2.1e-07 60.1 101 33.7
PSO675G6453 Papaver somniferum HOM05D003407 ORTHO05D001026 2.7e-07 59.7 179 24.0
PSO782G1244 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-07 59.7 173 29.5
RcHm_v2.0_Chr4g0409451 Rosa chinensis HOM05D011624 ORTHO05D014221 3.6e-07 59.3 76 32.9
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 4.7e-07 58.9 167 31.7
FAN17G2573 Fragaria x ananassa HOM05D000474 ORTHO05D035089 4.7e-07 58.9 75 36.0
PSO478G1479 Papaver somniferum HOM05D008740 ORTHO05D006738 4.7e-07 58.9 147 28.6
PSO170G3376 Papaver somniferum HOM05D000003 ORTHO05D000004 6.1e-07 58.5 166 30.1
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.0e-07 58.2 159 27.7
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.0e-07 58.2 183 26.2
RcHm_v2.0_Chr1g0354891 Rosa chinensis HOM05D008097 ORTHO05D010102 8.0e-07 58.2 179 30.2
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 1.0e-06 57.8 172 29.1
FAN03G2847 Fragaria x ananassa HOM05D008133 ORTHO05D009449 1.0e-06 57.8 47 48.9
PSO017G6133 Papaver somniferum HOM05D007919 ORTHO05D006738 1.0e-06 57.8 143 25.9
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-06 57.8 143 30.8
PSO017G5116 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-06 57.0 137 29.9
PSO761G0007 Papaver somniferum HOM05D000003 ORTHO05D001026 2.3e-06 56.6 180 26.7
PSO832G3899 Papaver somniferum HOM05D003407 ORTHO05D001026 2.3e-06 56.6 154 27.3
AUR62005088 Chenopodium quinoa HOM05D000157 ORTHO05D020420 3.0e-06 56.2 161 29.8
PSO170G3140 Papaver somniferum HOM05D003407 ORTHO05D001026 3.0e-06 56.2 158 27.2
PSO675G0080 Papaver somniferum HOM05D003407 ORTHO05D001026 4.0e-06 55.8 155 26.5
PSO832G0001 Papaver somniferum HOM05D003407 ORTHO05D001026 4.0e-06 55.8 158 27.8
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 6.7e-06 55.1 171 31.6
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.7e-06 55.1 174 28.2
PSO541G3800 Papaver somniferum HOM05D008740 ORTHO05D006738 8.8e-06 54.7 157 24.8


User provided reference genes

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