Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346011 Rosa chinensis HOM05D007972 ORTHO05D010352 1.1e-97 360.1 198 100.0
RcHm_v2.0_Chr1g0346041 Rosa chinensis HOM05D007972 ORTHO05D010352 5.1e-84 314.7 199 88.4
Prupe.2G122000 Prunus persica HOM05D007972 ORTHO05D010352 5.3e-65 251.5 199 73.9
MD07G1098000 Malus domestica HOM05D007972 ORTHO05D010352 3.4e-48 195.7 198 59.6
CiPaw.13G024900 Carya illinoinensis HOM05D007972 ORTHO05D010352 5.0e-47 191.8 186 62.4
QL04p029068 Quercus lobata HOM05D007972 ORTHO05D010352 4.2e-46 188.7 186 61.8
Cfa011053 Carpinus fangiana HOM05D007972 ORTHO05D010352 6.7e-44 181.4 186 58.6
TAR636G0859 Trochodendron aralioides HOM05D007972 ORTHO05D010352 1.3e-42 177.2 186 57.0
MD02G1218900 Malus domestica HOM05D007972 ORTHO05D010352 1.1e-41 174.1 199 57.3
MBI04_g13845_MAGBIO Magnolia biondii HOM05D007972 ORTHO05D010352 4.1e-41 172.2 199 55.8
Potri.017G027900 Populus trichocarpa HOM05D007972 ORTHO05D010352 1.4e-38 163.7 195 49.7
Nn1g00786 Nelumbo nucifera HOM05D007972 ORTHO05D010352 1.9e-38 163.3 191 52.9
Manes.04G044100 Manihot esculenta HOM05D007972 ORTHO05D010352 1.6e-37 160.2 203 48.8
Manes.11G122500 Manihot esculenta HOM05D007972 ORTHO05D010352 7.9e-37 157.9 196 49.0
Lalb_Chr01g0021721 Lupinus albus HOM05D007972 ORTHO05D010352 1.1e-35 154.1 196 48.5
Sabra17G0016900 Salix brachista HOM05D007972 ORTHO05D010352 1.1e-35 154.1 179 52.0
Sabra17G0017000 Salix brachista HOM05D007972 ORTHO05D010352 2.6e-35 152.9 197 47.7
CANSAT25G1078 Cannabis sativa HOM05D007972 ORTHO05D010352 3.7e-34 149.1 198 50.5
Oeu037442.1 Olea europaea HOM05D007972 ORTHO05D010352 1.1e-33 147.5 196 49.0
Glyma.09G244400 Glycine max HOM05D007972 ORTHO05D010352 4.1e-33 145.6 190 50.0
Glyma.18G249100 Glycine max HOM05D007972 ORTHO05D010352 9.1e-33 144.4 196 49.0
TWI14G1321 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 1.0e-31 141.0 172 50.6
Medtr7g092700 Medicago truncatula HOM05D007972 ORTHO05D010352 1.7e-31 140.2 204 48.5
VMungo1383G2083 Vigna mungo HOM05D007972 ORTHO05D010352 6.5e-31 138.3 186 51.1
VMungo1383G2794 Vigna mungo HOM05D007972 ORTHO05D010352 1.5e-30 137.1 186 47.8
Glyma.09G244600 Glycine max HOM05D007972 ORTHO05D010352 7.2e-30 134.8 186 48.4
Ca_08498_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 1.6e-29 133.7 203 46.8
Ca_29723_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 1.6e-29 133.7 203 46.8
Eucgr.E01544 Eucalyptus grandis HOM05D007972 ORTHO05D010352 3.6e-29 132.5 190 49.5
Psat3g070000 Pisum sativum HOM05D007972 ORTHO05D010352 1.4e-28 130.6 204 46.6
TPR.G4718 Trifolium pratense HOM05D007972 ORTHO05D010352 1.4e-28 130.6 195 44.6
Eucgr.E01542 Eucalyptus grandis HOM05D007972 ORTHO05D010352 2.3e-28 129.8 189 47.6
TWI59G1165 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 2.3e-28 129.8 191 42.9
Lj5g0008867 Lotus japonicus HOM05D007972 ORTHO05D010352 7.5e-27 124.8 194 43.8
Medtr7g081655 Medicago truncatula HOM05D007972 ORTHO05D010352 9.7e-27 124.4 195 44.6
Medtr7g092710 Medicago truncatula HOM05D007972 ORTHO05D010352 2.2e-26 123.2 186 44.1
TPR.G28769 Trifolium pratense HOM05D007972 ORTHO05D010352 3.7e-26 122.5 200 44.5
Migut.B01509 Erythranthe guttata HOM05D007972 ORTHO05D010352 1.4e-25 120.6 194 44.8
Lj1g0012968 Lotus japonicus HOM05D007972 ORTHO05D010352 4.1e-25 119.0 180 46.1
TPR.G14096 Trifolium pratense HOM05D007972 ORTHO05D010352 5.3e-25 118.6 197 42.6
Nitab4.5_0000563g0210 Nicotiana tabacum HOM05D007972 ORTHO05D010352 1.2e-24 117.5 191 42.9
Nitab4.5_0004837g0020 Nicotiana tabacum HOM05D007972 ORTHO05D010352 2.7e-24 116.3 191 42.4
Peaxi162Scf00853g00034 Petunia axillaris HOM05D007972 ORTHO05D010352 4.5e-24 115.5 189 42.9
Psat3g099040 Pisum sativum HOM05D007972 ORTHO05D010352 3.8e-23 112.5 166 47.0
AUR62041847 Chenopodium quinoa HOM05D007972 ORTHO05D010352 1.5e-22 110.5 188 41.5
AUR62032352 Chenopodium quinoa HOM05D007972 ORTHO05D010352 5.5e-22 108.6 188 41.0
Eucgr.E01539 Eucalyptus grandis HOM05D007972 ORTHO05D010352 3.6e-21 105.9 192 42.2
CAN.G1585.6 Capsicum annuum HOM05D007972 ORTHO05D010352 2.3e-20 103.2 193 41.5
Solyc01g089890.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 3.0e-20 102.8 192 41.7
QL04p029065 Quercus lobata HOM05D007972 ORTHO05D010352 1.2e-19 100.9 166 44.0
Glyma.18G248700 Glycine max HOM05D007972 ORTHO05D010352 1.3e-18 97.4 187 39.0
Phvul.008G048700 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.3e-18 97.4 181 39.8
PGSC0003DMG401031172 Solanum tuberosum HOM05D007972 ORTHO05D010352 2.0e-16 90.1 194 38.7
Sopen01g035730 Solanum pennellii HOM05D007972 ORTHO05D010352 1.0e-15 87.8 190 38.4
PGSC0003DMG400031171 Solanum tuberosum HOM05D007972 ORTHO05D010352 2.9e-15 86.3 191 38.2
CAN.G1585.7 Capsicum annuum HOM05D007972 ORTHO05D010352 1.9e-14 83.6 187 38.0
Sopen01g035720 Solanum pennellii HOM05D007972 ORTHO05D010352 4.2e-14 82.4 170 38.8
Solyc01g089880.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 9.4e-14 81.3 175 37.7
Eucgr.E01540 Eucalyptus grandis HOM05D007972 ORTHO05D010352 1.3e-10 70.9 109 45.0
Phvul.008G048466 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 2.4e-09 66.6 84 50.0
HPP92_025707 Vanilla planifolia HOM05D007972 ORTHO05D010352 5.4e-09 65.5 165 32.7
Nn1g00784 Nelumbo nucifera HOM05D044854 ORTHO05D010352 7.0e-09 65.1 151 31.8
Phvul.008G048532 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.2e-08 64.3 96 45.8
ClCG07G000640 Citrullus lanatus HOM05D000490 ORTHO05D000785 1.6e-08 63.9 142 34.5
CiPaw.03G258500 Carya illinoinensis HOM05D000490 ORTHO05D000785 1.3e-07 60.8 180 32.8
Sc09g0003980 Simmondsia chinensis HOM05D000490 ORTHO05D000785 1.3e-07 60.8 182 30.8
Hma1.2p1_0817F.1_g223150 Hydrangea macrophylla HOM05D000490 ORTHO05D000785 1.7e-07 60.5 194 33.0
Rhsim01G0268900 Rhododendron simsii HOM05D000490 ORTHO05D000785 1.7e-07 60.5 138 31.2
DCAR_006650 Daucus carota HOM05D000490 ORTHO05D000785 2.3e-07 60.1 181 32.0
Cfa006408 Carpinus fangiana HOM05D000490 ORTHO05D000785 2.9e-07 59.7 147 32.7
Lsat_1_v5_gn_1_36301 Lactuca sativa HOM05D000490 ORTHO05D000785 2.9e-07 59.7 135 35.6
Haze_04371 Corylus avellana HOM05D000490 ORTHO05D000785 5.0e-07 58.9 147 32.0
Dinv20291 Davidia involucrata HOM05D000490 ORTHO05D000785 5.0e-07 58.9 141 32.6
CsaV3_2G013680 Cucumis sativus L. HOM05D000490 ORTHO05D000785 8.6e-07 58.2 142 32.4
Sc12g0010180 Simmondsia chinensis HOM05D000490 ORTHO05D000785 8.6e-07 58.2 138 37.0
Ca_23307_v3 Cicer arietinum L. HOM05D000490 ORTHO05D000785 1.1e-06 57.8 136 38.2
Ciclev10029308m.g Citrus clementina HOM05D000490 ORTHO05D000785 1.1e-06 57.8 185 29.7
Nn1g00787 Nelumbo nucifera HOM05D039250 ORTHO05D010352 1.1e-06 57.8 129 37.2
Rhsim08G0232500 Rhododendron simsii HOM05D000490 ORTHO05D000785 1.1e-06 57.8 135 37.0
Actinidia19987 Actinidia chinensis HOM05D000490 ORTHO05D000785 1.5e-06 57.4 142 30.3
CSS0029709 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 1.5e-06 57.4 143 34.3
COL.COLO4_30645 Corchorus olitorius HOM05D000490 ORTHO05D000785 1.5e-06 57.4 131 38.9
Glyma.10G032600 Glycine max HOM05D000490 ORTHO05D000785 1.5e-06 57.4 166 33.7
Potri.002G044000 Populus trichocarpa HOM05D000490 ORTHO05D000785 1.5e-06 57.4 174 34.5
MELO3C014307.2 Cucumis melo HOM05D000490 ORTHO05D000785 1.9e-06 57.0 142 33.1
Sed0011012 Sechium edule HOM05D000490 ORTHO05D000785 1.9e-06 57.0 148 31.1
Duzib235G1330 Durio zibethinus HOM05D000490 ORTHO05D000785 2.5e-06 56.6 182 33.0
Oeu038452.1 Olea europaea HOM05D000490 ORTHO05D000785 2.5e-06 56.6 147 30.6
PGSC0003DMG400015078 Solanum tuberosum HOM05D000490 ORTHO05D000785 2.5e-06 56.6 138 33.3
CiPaw.08G122800 Carya illinoinensis HOM05D000490 ORTHO05D000785 3.3e-06 56.2 147 32.0
Lj9P662T17 Lonicera japonica HOM05D000490 ORTHO05D000785 3.3e-06 56.2 147 32.7
ATR0665G200 Amborella trichopoda HOM05D000490 ORTHO05D000785 4.3e-06 55.8 139 29.5
Lj3g0020222 Lotus japonicus HOM05D000490 ORTHO05D000785 4.3e-06 55.8 131 34.4
TAR362G0752 Trochodendron aralioides HOM05D000490 ORTHO05D000785 4.3e-06 55.8 156 32.7
unitig_749.g14047 Utricularia gibba HOM05D000490 ORTHO05D000785 4.3e-06 55.8 129 35.7
VMungo0720G3058 Vigna mungo HOM05D000490 ORTHO05D000785 4.3e-06 55.8 162 34.0
Atru.chr2.836 Acer truncatum HOM05D000490 ORTHO05D000785 5.6e-06 55.5 189 30.2
EL10Ac7g15777 Beta vulgaris HOM05D000490 ORTHO05D003667 5.6e-06 55.5 144 34.7
AUR62043082 Chenopodium quinoa HOM05D000490 ORTHO05D000785 5.6e-06 55.5 144 34.7
MD04G1225900 Malus domestica HOM05D000490 ORTHO05D000785 5.6e-06 55.5 182 32.4
MD05G1204600 Malus domestica HOM05D000490 ORTHO05D000785 5.6e-06 55.5 185 31.4
MD17G1175300 Malus domestica HOM05D000490 ORTHO05D000785 5.6e-06 55.5 134 33.6
QL12p042822 Quercus lobata HOM05D000490 ORTHO05D000785 7.3e-06 55.1 134 35.8
vmacro18800 Vaccinium macrocarpon HOM05D000490 ORTHO05D000785 7.3e-06 55.1 136 34.6
Actinidia24946 Actinidia chinensis HOM05D000490 ORTHO05D000785 9.5e-06 54.7 136 32.4


User provided reference genes

Program Settings