Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0345881 Rosa chinensis HOM05D002902 ORTHO05D046601 3.8e-34 147.5 70 100.0
FvH4_6g07030 Fragaria vesca HOM05D002902 ORTHO05D008934 5.9e-19 97.1 67 70.1
FvH4_4g00740 Fragaria vesca HOM05D002902 ORTHO05D008934 2.2e-18 95.1 63 74.6
RcHm_v2.0_Chr3g0456561 Rosa chinensis HOM05D002902 ORTHO05D008934 2.9e-18 94.7 65 67.7
FAN14G0019 Fragaria x ananassa HOM05D002608 ORTHO05D003838 9.4e-17 89.7 63 71.4
FAN09G2269 Fragaria x ananassa HOM05D002902 ORTHO05D008934 2.6e-14 81.6 68 60.3
RcHm_v2.0_Chr4g0439671 Rosa chinensis HOM05D002902 ORTHO05D343542 1.1e-12 76.3 50 70.0
Prupe.6G317000 Prunus persica HOM05D002902 ORTHO05D008934 1.4e-12 75.9 67 53.7
MD04G1196700 Malus domestica HOM05D002902 ORTHO05D008934 5.3e-12 73.9 67 52.2
FAN02G4538 Fragaria x ananassa HOM05D002902 ORTHO05D046601 7.0e-12 73.6 64 60.9
MD12G1209600 Malus domestica HOM05D002902 ORTHO05D008934 1.2e-11 72.8 67 53.7
Ciclev10002449m.g Citrus clementina HOM05D002902 ORTHO05D008934 1.7e-10 68.9 67 46.3
CiPaw.07G025600 Carya illinoinensis HOM05D002902 ORTHO05D008934 3.8e-10 67.8 67 50.7
Actinidia35539 Actinidia chinensis HOM05D002902 ORTHO05D008934 1.1e-09 66.2 66 53.0
QL03p017844 Quercus lobata HOM05D002902 ORTHO05D008934 2.5e-09 65.1 67 47.8
Sc06g0005800 Simmondsia chinensis HOM05D002902 ORTHO05D008934 2.5e-09 65.1 65 47.7
Atru.chr2.119 Acer truncatum HOM05D002902 ORTHO05D008934 3.2e-09 64.7 67 44.8
Haze_04098 Corylus avellana HOM05D002902 ORTHO05D008934 4.2e-09 64.3 67 47.8
QL93p2009_0056 Quercus lobata HOM05D002902 ORTHO05D008934 5.5e-09 63.9 67 46.3
FAN05G3849 Fragaria x ananassa HOM05D002902 ORTHO05D008934 7.2e-09 63.5 64 53.1
TAR365G0680 Trochodendron aralioides HOM05D002902 ORTHO05D008934 1.6e-08 62.4 65 50.8
CiPaw.08G158500 Carya illinoinensis HOM05D002902 ORTHO05D008934 2.1e-08 62.0 67 49.3
Cpa.g.sc48.128 Carica papaya HOM05D002902 ORTHO05D008934 2.7e-08 61.6 67 46.3
AUR62005246 Chenopodium quinoa HOM05D002902 ORTHO05D008934 4.7e-08 60.8 64 50.0
PSO170G6291 Papaver somniferum HOM05D002902 ORTHO05D008934 6.1e-08 60.5 67 43.3
PSO302G0075 Papaver somniferum HOM05D002902 ORTHO05D008934 1.0e-07 59.7 67 43.3
VMungo0720G1378 Vigna mungo HOM05D002902 ORTHO05D008934 1.4e-07 59.3 68 48.5
arahy.Tifrunner.gnm1.ann1.FXRR0Y Arachis hypogaea HOM05D002902 ORTHO05D008934 2.3e-07 58.5 75 41.3
arahy.Tifrunner.gnm1.ann1.WTC9PY Arachis hypogaea HOM05D002902 ORTHO05D008934 2.3e-07 58.5 75 41.3
AUR62000718 Chenopodium quinoa HOM05D002902 ORTHO05D008934 3.0e-07 58.2 60 51.7
Ah.04g161230 Amaranthus hybridus HOM05D002902 ORTHO05D008934 4.0e-07 57.8 64 51.6
ClCG03G017590 Citrullus lanatus HOM05D002902 ORTHO05D008934 4.0e-07 57.8 62 40.3
TAR636G3513 Trochodendron aralioides HOM05D002902 ORTHO05D008934 5.2e-07 57.4 66 50.0
Ca_10155_v3 Cicer arietinum L. HOM05D001164 ORTHO05D001031 6.7e-07 57.0 72 41.7
Ca_29831_v3 Cicer arietinum L. HOM05D001164 ORTHO05D001031 6.7e-07 57.0 72 41.7
GSVIVG01031193001 Vitis vinifera HOM05D002902 ORTHO05D008934 6.7e-07 57.0 67 40.3
Hma1.2p1_1320F.1_g275300 Hydrangea macrophylla HOM05D002902 ORTHO05D008934 8.8e-07 56.6 68 47.1
Aqoxy2G02858 Aquilegia oxysepala HOM05D002902 ORTHO05D008934 1.2e-06 56.2 63 47.6
arahy.Tifrunner.gnm1.ann1.LM15HT Arachis hypogaea HOM05D002902 ORTHO05D008934 1.2e-06 56.2 74 40.5
Sed0018825 Sechium edule HOM05D002902 ORTHO05D008934 1.2e-06 56.2 67 43.3
vmacro01534 Vaccinium macrocarpon HOM05D002902 ORTHO05D008934 1.2e-06 56.2 68 45.6
MELO3C015270.2 Cucumis melo HOM05D002902 ORTHO05D008934 1.5e-06 55.8 62 40.3
Glyma.10G149700 Glycine max HOM05D002902 ORTHO05D008934 1.5e-06 55.8 71 42.3
Psat0s1958g0160 Pisum sativum HOM05D002902 ORTHO05D008934 1.5e-06 55.8 63 41.3
arahy.Tifrunner.gnm1.ann1.A0V37P Arachis hypogaea HOM05D002902 ORTHO05D008934 2.0e-06 55.5 65 43.1
COL.COLO4_03802 Corchorus olitorius HOM05D002902 ORTHO05D008934 2.0e-06 55.5 68 39.7
CsaV3_1G038450 Cucumis sativus L. HOM05D002902 ORTHO05D008934 2.6e-06 55.1 62 40.3
Actinidia19766 Actinidia chinensis HOM05D002902 ORTHO05D008934 3.3e-06 54.7 65 43.1
arahy.Tifrunner.gnm1.ann1.4N6YKT Arachis hypogaea HOM05D002902 ORTHO05D008934 4.4e-06 54.3 75 38.7
Potri.013G011800 Populus trichocarpa HOM05D002902 ORTHO05D008934 4.4e-06 54.3 67 41.8
Thhalv10028973m.g Eutrema salsugineum HOM05D002902 ORTHO05D008934 5.7e-06 53.9 67 37.3
Rhsim11G0092300 Rhododendron simsii HOM05D002902 ORTHO05D008934 7.5e-06 53.5 65 46.2
AT4G11060 Arabidopsis thaliana HOM05D002902 ORTHO05D008934 9.7e-06 53.1 67 37.3
Phvul.007G199200 Phaseolus vulgaris HOM05D002902 ORTHO05D008934 9.7e-06 53.1 71 42.3


User provided reference genes

Program Settings