Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0345631 Rosa chinensis HOM05D008705 ORTHO05D000669 1.4e-75 286.2 143 100.0
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 1.6e-55 219.5 109 97.2
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 3.6e-55 218.4 109 96.3
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 2.0e-53 212.6 109 94.5
RcHm_v2.0_Chr0c17g0499961 Rosa chinensis HOM05D008705 ORTHO05D000669 6.8e-38 161.0 114 69.3
RcHm_v2.0_Chr4g0385011 Rosa chinensis HOM05D008705 ORTHO05D000669 6.8e-38 161.0 111 69.4
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 4.4e-37 158.3 111 66.7
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 4.4e-37 158.3 111 66.7
RcHm_v2.0_Chr4g0415291 Rosa chinensis HOM05D008705 ORTHO05D000669 5.8e-29 131.3 66 95.5
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 9.8e-29 130.6 93 65.6
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 2.2e-28 129.4 111 59.5
FvH4_2g08145 Fragaria vesca HOM05D008705 ORTHO05D000669 4.9e-28 128.3 111 54.1
FvH4_4g05492 Fragaria vesca HOM05D008705 ORTHO05D000669 4.9e-28 128.3 111 54.1
RcHm_v2.0_Chr6g0272461 Rosa chinensis HOM05D008705 ORTHO05D000669 8.3e-28 127.5 66 92.4
FAN20G2701 Fragaria x ananassa HOM05D008705 ORTHO05D000669 4.1e-27 125.2 111 53.2
FAN09G1129 Fragaria x ananassa HOM05D008705 ORTHO05D000669 6.0e-26 121.3 118 50.8
FAN15G0639 Fragaria x ananassa HOM05D008705 ORTHO05D000669 6.0e-26 121.3 118 50.8
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 4.7e-23 111.7 107 48.6
FAN17G1365 Fragaria x ananassa HOM05D008705 ORTHO05D000669 4.9e-20 101.7 111 47.7
RcHm_v2.0_Chr4g0410891 Rosa chinensis HOM05D008705 ORTHO05D000669 4.1e-19 98.6 68 70.6
FAN12G3968 Fragaria x ananassa HOM05D008705 ORTHO05D000669 5.4e-19 98.2 108 48.1
RcHm_v2.0_Chr2g0102381 Rosa chinensis HOM05D008705 ORTHO05D000669 9.2e-19 97.4 48 93.8
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 4.0e-14 82.0 109 35.8
Aqoxy3G01388 Aquilegia oxysepala HOM05D000791 ORTHO05D000669 6.8e-14 81.3 112 39.3
RcHm_v2.0_Chr2g0106131 Rosa chinensis HOM05D008705 ORTHO05D000669 1.5e-13 80.1 37 100.0
Lj4A276T51 Lonicera japonica HOM05D008705 ORTHO05D000669 2.0e-13 79.7 71 50.7
Aqoxy4G01021 Aquilegia oxysepala HOM05D000791 ORTHO05D000669 2.6e-13 79.3 112 37.5
RcHm_v2.0_Chr3g0476041 Rosa chinensis HOM05D008705 ORTHO05D000669 4.4e-13 78.6 37 97.3
Atru.chr9.7 Acer truncatum HOM05D008705 ORTHO05D000669 9.9e-13 77.4 109 35.8
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 1.7e-12 76.6 107 33.6
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 1.4e-11 73.6 110 31.8
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.6e-10 68.6 114 33.3
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 7.8e-10 67.8 115 32.2
Oeu006554.1 Olea europaea HOM05D017951 ORTHO05D020916 1.3e-09 67.0 106 29.2
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 1.7e-09 66.6 95 35.8
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 2.3e-09 66.2 108 33.3
FAN21G0826 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.0e-09 65.9 114 32.5
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 5.1e-09 65.1 111 36.0
Ca_17856_v3 Cicer arietinum L. HOM05D008291 ORTHO05D003568 8.6e-09 64.3 111 32.4
Dinv02106 Davidia involucrata HOM05D000791 ORTHO05D000669 1.1e-08 63.9 111 36.0
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 1.1e-08 63.9 107 36.4
PSO675G8190 Papaver somniferum HOM05D017761 ORTHO05D000669 1.1e-08 63.9 91 33.0
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 1.1e-08 63.9 118 32.2
COL.COLO4_19832 Corchorus olitorius HOM05D015286 ORTHO05D000669 1.5e-08 63.5 109 34.9
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 1.5e-08 63.5 111 34.2
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 1.5e-08 63.5 118 32.2
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.5e-08 63.5 118 32.2
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 1.9e-08 63.2 118 31.4
CiPaw.14G126400 Carya illinoinensis HOM05D003120 ORTHO05D003568 2.5e-08 62.8 111 31.5
TPR.G21602 Trifolium pratense HOM05D008291 ORTHO05D003568 2.5e-08 62.8 109 29.4
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.3e-08 62.4 118 32.2
PSO384G0881 Papaver somniferum HOM05D017761 ORTHO05D000669 4.3e-08 62.0 102 30.4
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 5.6e-08 61.6 105 31.4
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 5.6e-08 61.6 112 29.5
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 5.6e-08 61.6 105 31.4
Dinv12412 Davidia involucrata HOM05D010418 ORTHO05D000669 5.6e-08 61.6 107 34.6
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 5.6e-08 61.6 111 33.3
FAN15G2881 Fragaria x ananassa HOM05D009879 ORTHO05D009647 5.6e-08 61.6 104 31.7
Dinv18594 Davidia involucrata HOM05D000791 ORTHO05D000669 9.5e-08 60.8 114 30.7
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 9.5e-08 60.8 118 31.4
PSO675G3989 Papaver somniferum HOM05D000791 ORTHO05D000669 9.5e-08 60.8 91 31.9
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.2e-07 60.5 108 31.5
CANSAT56G2277 Cannabis sativa HOM05D014621 ORTHO05D015019 1.6e-07 60.1 114 31.6
RcHm_v2.0_Chr2g0148461 Rosa chinensis HOM05D008705 ORTHO05D000669 1.6e-07 60.1 39 66.7
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 2.1e-07 59.7 111 30.6
QL93p0093_0054 Quercus lobata HOM05D003120 ORTHO05D003568 2.8e-07 59.3 111 30.6
Cfa009670 Carpinus fangiana HOM05D003120 ORTHO05D003568 4.7e-07 58.5 111 29.7
Dinv03037 Davidia involucrata HOM05D010418 ORTHO05D000669 4.7e-07 58.5 114 31.6
Dinv18123 Davidia involucrata HOM05D010418 ORTHO05D000669 4.7e-07 58.5 114 31.6
FvH4_4g15892 Fragaria vesca HOM05D008705 ORTHO05D000669 4.7e-07 58.5 42 59.5
Lsat_1_v5_gn_7_48900 Lactuca sativa HOM05D014621 ORTHO05D015019 4.7e-07 58.5 101 29.7
Lsat_1_v5_gn_2_105040 Lactuca sativa HOM05D014621 ORTHO05D015019 8.1e-07 57.8 101 27.7
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.1e-07 57.8 113 27.4
Dinv09859 Davidia involucrata HOM05D000791 ORTHO05D000669 1.8e-06 56.6 107 30.8
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.8e-06 56.6 113 26.5
MBI19_g46209_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.8e-06 56.6 113 26.5
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 2.4e-06 56.2 106 29.2
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.1e-06 55.8 97 32.0
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 3.1e-06 55.8 107 36.4
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 4.0e-06 55.5 106 28.3
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.2e-06 55.1 113 26.5
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 6.8e-06 54.7 115 27.8
SGA_v2.0_scaffold752G53551 Striga asiatica HOM05D025956 ORTHO05D000669 8.9e-06 54.3 112 30.4


User provided reference genes

Program Settings