Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.6e-42 172.9 80 100.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-33 145.6 79 83.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 4.8e-33 144.1 79 83.5
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.8e-33 144.1 79 83.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.8e-33 144.1 79 83.5
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.8e-33 144.1 79 83.5
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 8.2e-33 143.3 79 82.3
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.1e-32 142.9 79 82.3
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.8e-32 142.1 79 79.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.8e-32 142.1 79 79.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.4e-32 141.7 79 81.0
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 5.3e-32 140.6 79 79.7
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 9.0e-32 139.8 79 79.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 9.0e-32 139.8 79 79.7
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.0e-31 138.7 79 78.5
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.6e-31 138.3 79 78.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.4e-31 137.9 79 78.5
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 4.5e-31 137.5 79 78.5
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 5.9e-31 137.1 79 78.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.9e-31 137.1 79 78.5
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.9e-31 137.1 79 78.5
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.0e-30 136.3 79 77.2
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.0e-30 136.3 79 77.2
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.3e-30 136.0 79 77.2
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.7e-30 135.6 79 78.5
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.7e-30 135.6 75 80.0
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-30 134.8 79 75.9
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-30 134.8 79 75.9
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.9e-30 134.8 79 77.2
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.9e-30 134.8 79 75.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.8e-30 134.4 79 75.9
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.0e-30 134.0 79 75.9
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.0e-30 134.0 79 75.9
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 6.5e-30 133.7 79 75.9
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 6.5e-30 133.7 79 75.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.5e-30 133.7 79 75.9
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 8.5e-30 133.3 79 72.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 8.5e-30 133.3 79 77.2
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 8.5e-30 133.3 79 75.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.1e-29 132.9 79 74.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.1e-29 132.9 79 75.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.1e-29 132.9 79 74.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.1e-29 132.9 79 73.4
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.1e-29 132.9 79 74.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.4e-29 132.5 79 73.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.9e-29 132.1 79 74.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-29 132.1 79 74.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-29 132.1 79 74.7
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-29 132.1 79 73.4
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.5e-29 131.7 79 75.9
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 74.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 72.2
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 75.9
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 75.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 75.9
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 75.9
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 3.2e-29 131.3 79 75.9
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.2e-29 131.3 80 76.2
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.2e-29 131.0 79 75.9
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 4.2e-29 131.0 78 74.4
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 7.2e-29 130.2 79 72.2
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.2e-29 130.2 79 74.7
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 9.4e-29 129.8 79 73.4
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.2e-28 129.4 79 73.4
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.2e-28 129.4 79 73.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.2e-28 129.4 79 73.4
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.6e-28 129.0 79 73.4
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.6e-28 129.0 79 74.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.6e-28 129.0 79 73.4
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.6e-28 129.0 80 75.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 2.1e-28 128.6 75 77.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.1e-28 128.6 79 73.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.1e-28 128.6 79 72.2
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.7e-28 128.3 75 76.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.7e-28 128.3 79 73.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.7e-28 128.3 79 72.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 2.7e-28 128.3 75 77.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.6e-28 127.5 79 72.2
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.6e-28 127.5 79 72.2
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.6e-28 127.5 75 76.0
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 6.1e-28 127.1 79 73.4
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 7.9e-28 126.7 79 73.4
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 7.9e-28 126.7 79 73.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.0e-27 126.3 80 73.8
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.0e-27 126.3 75 76.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.0e-27 126.3 75 76.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.4e-27 125.9 75 74.7
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.4e-27 125.9 75 74.7
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.4e-27 125.9 75 74.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.4e-27 125.9 75 74.7
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.8e-27 125.6 79 70.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.8e-27 125.6 79 70.9
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.8e-27 125.6 79 70.9
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 2.3e-27 125.2 79 69.6
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.3e-27 125.2 79 72.2
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.3e-27 125.2 80 73.8
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.0e-27 124.8 79 72.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 3.0e-27 124.8 75 74.7
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 3.0e-27 124.8 75 74.7
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 3.0e-27 124.8 79 69.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 3.0e-27 124.8 79 70.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.7e-27 123.6 79 70.9
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.7e-27 123.6 107 57.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 8.8e-27 123.2 79 70.9
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 8.8e-27 123.2 79 70.9
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 8.8e-27 123.2 79 70.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 8.8e-27 123.2 79 70.9
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 8.8e-27 123.2 79 70.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 8.8e-27 123.2 79 70.9
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 8.8e-27 123.2 79 70.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-26 122.5 79 69.6
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-26 122.5 79 69.6
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.5e-26 122.5 79 70.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.3e-26 120.9 79 68.4
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 5.7e-26 120.6 75 72.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 7.4e-26 120.2 79 67.1
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 7.4e-26 120.2 79 69.6
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 9.7e-26 119.8 79 68.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.3e-25 119.4 79 70.9
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.2e-25 118.6 75 72.0
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.2e-25 118.6 79 65.8
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.7e-25 117.9 79 65.8
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.3e-25 117.1 79 68.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 6.3e-25 117.1 79 64.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.1e-24 116.3 79 64.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.4e-24 115.2 75 70.7
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 3.1e-24 114.8 80 67.5
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 4.1e-24 114.4 75 70.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 4.1e-24 114.4 75 70.7
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.5e-23 112.5 79 65.8
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 7.9e-20 100.1 77 57.1
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.0e-19 99.8 78 61.5
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.1e-19 97.4 92 54.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-18 96.3 109 45.9
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 7.4e-18 93.6 78 51.3
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.2e-17 92.0 53 83.0
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 7.0e-16 87.0 53 77.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.2e-15 86.3 43 79.1
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 3.5e-15 84.7 65 61.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 5.9e-15 84.0 47 70.2
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 7.7e-15 83.6 77 49.4
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.7e-14 82.4 43 76.7
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.2e-14 82.0 59 62.7
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-13 79.7 59 61.0
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.9e-13 79.0 59 61.0
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.5e-13 78.6 43 76.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.7e-12 75.1 43 72.1
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.7e-12 74.3 42 66.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.4e-11 72.8 44 63.6
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.8e-11 72.4 75 49.3
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.3e-11 72.0 44 63.6
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 2.2e-09 65.5 44 59.1
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.5e-07 58.2 79 43.0


User provided reference genes

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