Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0344791 Rosa chinensis HOM05D004133 ORTHO05D004683 2.5e-12 74.7 38 100.0
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 1.0e-10 69.3 38 89.5
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.3e-10 68.2 38 86.8
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.3e-10 68.2 38 86.8
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 8.7e-10 66.2 38 84.2
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 1.1e-09 65.9 37 86.5
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.1e-09 65.9 37 86.5
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 1.1e-09 65.9 38 84.2
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 1.1e-09 65.9 37 86.5
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 2.4e-07 58.2 38 81.6
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 2.4e-07 58.2 32 87.5
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 2.4e-07 58.2 32 87.5
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 4.1e-07 57.4 38 78.9
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 4.1e-07 57.4 38 78.9
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 5.3e-07 57.0 38 78.9
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 5.3e-07 57.0 38 78.9
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 5.3e-07 57.0 38 76.3
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 5.3e-07 57.0 38 78.9
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 5.3e-07 57.0 38 76.3
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 6.9e-07 56.6 38 78.9
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 6.9e-07 56.6 38 78.9
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 73.7
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 73.7
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 73.7
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 76.3
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 76.3
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 76.3
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 76.3
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 9.0e-07 56.2 38 76.3
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 76.3
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 76.3
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 73.7
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 76.3
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 76.3
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 1.2e-06 55.8 38 76.3
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 1.5e-06 55.5 38 76.3
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 1.5e-06 55.5 34 76.5
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 1.5e-06 55.5 32 84.4
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 1.5e-06 55.5 38 76.3
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 1.5e-06 55.5 38 73.7
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 1.5e-06 55.5 38 73.7
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 76.3
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 2.0e-06 55.1 32 84.4
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 76.3
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 2.0e-06 55.1 32 81.2
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 76.3
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 2.0e-06 55.1 38 73.7
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BcaC04g19526 Brassica carinata HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 71.1
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 2.6e-06 54.7 38 73.7
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 3.4e-06 54.3 38 73.7
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 3.4e-06 54.3 38 73.7
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 3.4e-06 54.3 38 73.7
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 3.4e-06 54.3 32 81.2
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 3.4e-06 54.3 31 80.6
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 3.4e-06 54.3 38 73.7
Dinv18869 Davidia involucrata HOM05D004133 ORTHO05D004683 4.5e-06 53.9 38 76.3
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 4.5e-06 53.9 32 78.1
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 4.5e-06 53.9 38 73.7
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 5.9e-06 53.5 38 68.4
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 5.9e-06 53.5 38 68.4
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 5.9e-06 53.5 32 78.1
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 5.9e-06 53.5 38 71.1
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 5.9e-06 53.5 38 71.1
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 5.9e-06 53.5 38 71.1
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 7.7e-06 53.1 32 78.1
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 7.7e-06 53.1 38 71.1
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 7.7e-06 53.1 33 78.8
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 7.7e-06 53.1 32 78.1
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.0e-05 52.8 38 71.1
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 1.0e-05 52.8 32 75.0
Rhsim13G0198800 Rhododendron simsii HOM05D004133 ORTHO05D004683 1.0e-05 52.8 32 81.2
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.0e-05 52.8 38 73.7


User provided reference genes

Program Settings