Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0344721 Rosa chinensis HOM05D004310 ORTHO05D005403 3.8e-51 204.5 102 100.0
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 7.8e-12 73.9 83 51.8
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 5.0e-11 71.2 49 75.5
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 6.6e-11 70.9 71 54.9
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 8.6e-11 70.5 47 78.7
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
FAN06G2445 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-10 69.7 47 78.7
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 1.9e-10 69.3 74 55.4
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.9e-10 69.3 58 62.1
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 1.9e-10 69.3 47 76.6
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-10 69.3 47 78.7
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.9e-10 69.3 49 73.5
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 2.5e-10 68.9 49 73.5
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 4.3e-10 68.2 47 76.6
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 4.3e-10 68.2 47 76.6
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 4.3e-10 68.2 47 76.6
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 4.3e-10 68.2 47 76.6
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 4.3e-10 68.2 47 76.6
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 5.6e-10 67.8 47 72.3
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 5.6e-10 67.8 47 74.5
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 7.3e-10 67.4 47 76.6
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 7.3e-10 67.4 58 60.3
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 7.3e-10 67.4 45 75.6
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 7.3e-10 67.4 47 76.6
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 9.5e-10 67.0 47 72.3
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 9.5e-10 67.0 47 74.5
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 9.5e-10 67.0 47 74.5
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 9.5e-10 67.0 54 64.8
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 9.5e-10 67.0 49 69.4
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 9.5e-10 67.0 49 71.4
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 74.5
BcaC04g24118 Brassica carinata HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 72.3
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 72.3
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 72.3
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 1.2e-09 66.6 45 73.3
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 74.5
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 74.5
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.2e-09 66.6 47 74.5
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 1.2e-09 66.6 69 52.2
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.6e-09 66.2 49 71.4
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.6e-09 66.2 49 71.4
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 74.5
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 1.6e-09 66.2 69 55.1
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 1.6e-09 66.2 72 52.8
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 76.6
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 76.6
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 1.6e-09 66.2 49 71.4
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.6e-09 66.2 47 72.3
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 1.6e-09 66.2 66 54.5
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 2.1e-09 65.9 79 49.4
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 2.1e-09 65.9 47 70.2
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 2.1e-09 65.9 47 72.3
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 2.1e-09 65.9 47 72.3
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 2.8e-09 65.5 45 73.3
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 2.8e-09 65.5 47 72.3
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.8e-09 65.5 76 52.6
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.8e-09 65.5 49 71.4
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 2.8e-09 65.5 46 71.7
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 2.8e-09 65.5 47 72.3
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 2.8e-09 65.5 47 72.3
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 72.3
CARHR249350 Cardamine hirsuta HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 72.3
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 74.5
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 72.3
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 70.2
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 3.6e-09 65.1 45 71.1
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 70.2
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 3.6e-09 65.1 58 58.6
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 3.6e-09 65.1 73 53.4
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 3.6e-09 65.1 73 53.4
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 3.6e-09 65.1 47 70.2
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 70.2
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 70.2
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 70.2
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 70.2
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 72.3
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 68.1
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 4.7e-09 64.7 73 53.4
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 4.7e-09 64.7 47 70.2
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 6.2e-09 64.3 47 72.3
ATR0602G109 Amborella trichopoda HOM05D004310 ORTHO05D005403 8.0e-09 63.9 46 67.4
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 8.0e-09 63.9 45 73.3
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 8.0e-09 63.9 47 70.2
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 8.0e-09 63.9 47 70.2
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 8.0e-09 63.9 47 70.2
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 8.0e-09 63.9 47 70.2
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 8.0e-09 63.9 47 70.2
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 1.1e-08 63.5 47 70.2
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 1.1e-08 63.5 47 70.2
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.1e-08 63.5 47 70.2
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.1e-08 63.5 47 70.2
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 1.1e-08 63.5 47 70.2
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.4e-08 63.2 47 70.2
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 1.4e-08 63.2 47 68.1
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 1.4e-08 63.2 47 70.2
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 1.4e-08 63.2 47 70.2
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 1.8e-08 62.8 47 70.2
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 1.8e-08 62.8 56 60.7
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 1.8e-08 62.8 47 70.2
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 2.3e-08 62.4 47 68.1
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 2.3e-08 62.4 47 66.0
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 3.1e-08 62.0 47 66.0
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 4.0e-08 61.6 47 68.1
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.0e-08 61.6 47 68.1
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 5.2e-08 61.2 46 65.2
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 8.9e-08 60.5 47 68.1
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 8.9e-08 60.5 46 65.2
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 1.2e-07 60.1 47 68.1
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.2e-07 60.1 44 68.2
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 2.0e-07 59.3 46 63.0
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 2.0e-07 59.3 46 63.0
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 3.4e-07 58.5 43 65.1
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 3.4e-07 58.5 43 65.1
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 3.4e-07 58.5 43 65.1
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 3.4e-07 58.5 47 66.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.4e-07 58.2 46 63.0
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 5.8e-07 57.8 47 61.7
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 5.8e-07 57.8 47 66.0
PSO724G1042 Papaver somniferum HOM05D004310 ORTHO05D005403 1.3e-06 56.6 45 62.2
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 8.3e-06 53.9 45 62.2


User provided reference genes

Program Settings