Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.6e-41 172.2 80 100.0
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.6e-15 85.9 48 77.1
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.5e-15 84.3 48 75.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-15 84.3 48 75.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-15 84.3 48 75.0
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-15 84.3 48 75.0
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-15 84.3 48 75.0
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.7e-14 82.4 48 72.9
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.7e-14 82.4 48 72.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.7e-14 82.4 48 72.9
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.9e-14 81.6 48 68.8
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.8e-14 81.3 48 70.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 5.0e-14 80.9 48 70.8
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.5e-14 80.5 44 79.5
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 6.5e-14 80.5 48 68.8
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 6.5e-14 80.5 48 68.8
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 8.5e-14 80.1 48 70.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.9e-13 79.0 48 68.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.5e-13 78.6 48 68.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-13 78.2 48 66.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-13 78.2 48 66.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.2e-13 78.2 48 64.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.2e-13 77.8 47 68.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.5e-13 77.4 48 62.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 7.2e-13 77.0 48 64.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 7.2e-13 77.0 48 64.6
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.2e-13 77.0 48 62.5
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 7.2e-13 77.0 48 64.6
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 7.2e-13 77.0 48 66.7
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 66.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 64.6
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 9.4e-13 76.6 48 64.6
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 9.4e-13 76.6 48 66.7
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 9.4e-13 76.6 43 76.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 66.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 64.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 64.6
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 64.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 64.6
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 66.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.2e-12 76.3 48 64.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-12 75.9 48 66.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.1e-12 75.5 48 62.5
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.1e-12 75.5 48 64.6
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.1e-12 75.5 48 64.6
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.1e-12 75.5 48 64.6
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.7e-12 75.1 48 62.5
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 62.5
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 62.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 62.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 62.5
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 60.4
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 4.7e-12 74.3 48 64.6
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 6.1e-12 73.9 48 60.4
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 6.1e-12 73.9 48 64.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 6.1e-12 73.9 48 64.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.1e-12 73.9 48 62.5
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 8.0e-12 73.6 48 56.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.0e-11 73.2 48 66.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.0e-11 73.2 48 60.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.0e-11 73.2 48 60.4
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.4e-11 72.8 48 62.5
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.8e-11 72.4 49 65.3
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.8e-11 72.4 48 56.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.3e-11 72.0 44 65.9
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.3e-11 72.0 43 69.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 3.0e-11 71.6 48 58.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-11 71.2 48 60.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-11 71.2 48 64.6
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 4.0e-11 71.2 48 62.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 5.2e-11 70.9 48 60.4
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 62.5
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 58.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 58.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 58.3
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 62.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.2e-11 70.9 45 60.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.2e-11 70.9 48 62.5
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-11 70.5 48 60.4
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-11 70.5 48 60.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-11 70.5 48 60.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.7e-11 70.5 48 60.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 6.7e-11 70.5 45 64.4
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 8.8e-11 70.1 48 60.4
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 8.8e-11 70.1 48 62.5
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 8.8e-11 70.1 48 60.4
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.1e-10 69.7 48 58.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-10 69.7 48 58.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.1e-10 69.7 48 58.3
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.1e-10 69.7 48 60.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.1e-10 69.7 48 56.2
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.5e-10 69.3 48 54.2
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.0e-10 68.9 48 62.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.0e-10 68.9 48 62.5
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 2.0e-10 68.9 48 60.4
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.0e-10 68.9 45 62.2
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-10 68.9 44 63.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.6e-10 68.6 44 63.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.6e-10 68.6 48 56.2
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 2.6e-10 68.6 45 62.2
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.6e-10 68.6 48 58.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.3e-10 68.2 48 60.4
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.3e-10 68.2 48 58.3
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.3e-10 68.2 48 58.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.3e-10 68.2 48 58.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.7e-10 67.4 45 62.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.7e-10 67.4 45 62.2
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 7.5e-10 67.0 49 55.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.3e-09 66.2 48 58.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.7e-09 65.9 54 57.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.7e-09 65.9 48 56.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.2e-09 65.5 43 65.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.2e-09 65.5 48 58.3
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.2e-09 65.5 48 58.3
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.8e-09 65.1 48 52.1
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.8e-09 65.1 43 65.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.8e-09 65.1 48 54.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.8e-09 65.1 48 50.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.7e-09 64.7 45 60.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.7e-09 64.7 48 50.0
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 3.7e-09 64.7 43 62.8
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 4.8e-09 64.3 48 56.2
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 8.2e-09 63.5 48 54.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.2e-09 63.5 43 62.8
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.2e-09 63.5 43 62.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 8.2e-09 63.5 43 62.8
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.1e-08 63.2 48 47.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.4e-08 62.8 49 57.1
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.4e-08 62.8 44 52.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.8e-08 62.4 48 56.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.4e-08 62.0 49 55.1
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 5.3e-08 60.8 49 53.1
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.2e-07 59.7 43 58.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.2e-07 59.7 48 45.8
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 3.5e-07 58.2 45 57.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.5e-07 57.8 49 53.1
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 4.5e-07 57.8 49 53.1
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 4.5e-07 57.8 49 53.1
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 4.5e-07 57.8 48 45.8
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 5.9e-07 57.4 54 46.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-06 56.2 36 63.9


User provided reference genes

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