Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.1e-306 1055.8 534 100.0
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.2e-286 989.2 539 93.5
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-285 986.1 533 93.8
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-285 986.1 539 93.3
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.4e-285 984.9 533 93.6
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.2e-283 978.4 533 93.1
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-283 978.0 533 93.4
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.2e-265 919.5 535 86.2
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.3e-263 911.4 533 84.6
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 2.9e-259 898.3 535 83.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.6e-228 796.2 535 75.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.5e-223 777.3 528 73.7
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 3.7e-222 775.0 526 74.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.7e-212 742.3 539 70.1
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.7e-211 739.6 530 69.6
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.9e-210 736.1 508 72.0
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 1.9e-210 736.1 534 69.7
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.1e-209 732.6 508 71.7
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.4e-208 729.9 508 71.3
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 5.2e-208 728.0 551 67.2
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 5.7e-207 724.5 506 71.7
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 5.7e-207 724.5 537 68.9
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 7.0e-205 717.6 529 67.7
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.2e-204 716.8 480 74.8
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.2e-204 716.8 508 71.5
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 1.6e-204 716.5 544 66.9
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.0e-203 713.8 506 71.3
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.3e-203 712.6 506 71.1
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 2.5e-202 709.1 530 67.0
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.5e-202 709.1 515 68.5
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.2e-201 706.8 533 68.9
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 2.6e-199 699.1 507 67.7
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 4.4e-199 698.4 503 68.4
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 7.5e-199 697.6 515 67.2
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.9e-198 695.7 503 68.8
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 9.2e-197 690.6 507 67.9
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 1.6e-196 689.9 507 67.5
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.6e-196 689.9 529 65.6
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 3.0e-195 685.6 506 68.0
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.9e-195 685.3 511 67.7
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 5.0e-195 684.9 530 65.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 3.3e-194 682.2 510 67.3
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.6e-193 679.9 533 65.9
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 2.8e-193 679.1 524 66.2
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.4e-192 676.8 530 65.1
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.8e-192 676.4 509 68.8
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.8e-192 676.4 501 66.5
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.8e-192 674.5 535 65.6
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 3.4e-191 672.2 501 66.7
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 3.7e-190 668.7 510 66.5
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.1e-189 667.2 508 65.2
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.4e-189 666.0 522 64.6
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 4.1e-189 665.2 532 63.9
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.2e-188 663.7 522 64.9
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.5e-186 656.8 526 63.3
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.5e-186 656.0 526 63.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 3.6e-185 652.1 514 66.1
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.8e-184 649.8 504 64.3
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 6.8e-184 647.9 517 62.5
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 3.4e-183 645.6 502 64.9
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 5.8e-183 644.8 513 64.9
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 7.5e-183 644.4 515 63.3
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 8.3e-182 641.0 518 63.1
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 9.2e-181 637.5 517 61.5
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.0e-179 634.0 502 62.7
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 2.3e-179 632.9 515 61.7
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 3.0e-179 632.5 684 52.3
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 8.6e-179 630.9 507 63.1
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.6e-177 626.7 534 59.4
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 8.1e-177 624.4 535 60.4
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.1e-176 624.0 530 61.7
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.4e-176 622.9 544 58.3
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.2e-174 616.3 532 60.0
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 3.8e-174 615.5 508 61.6
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.4e-173 613.6 507 61.5
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.9e-173 613.2 533 61.4
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.4e-173 612.8 501 60.5
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 2.7e-172 609.4 538 57.6
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 1.3e-171 607.1 522 62.5
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 9.6e-170 600.9 528 57.0
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 4.7e-169 598.6 472 64.6
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 6.9e-168 594.7 537 58.8
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.2e-167 594.0 524 59.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.5e-167 593.6 510 59.0
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 2.0e-167 593.2 525 60.0
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 9.9e-167 590.9 544 59.6
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-166 590.1 524 59.4
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 9.3e-165 584.3 533 56.7
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.3e-163 580.5 533 56.7
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.3e-163 579.7 532 55.3
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 5.6e-162 575.1 533 56.3
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 5.6e-162 575.1 582 54.5
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.6e-161 573.5 520 56.7
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 4.0e-160 568.9 508 58.5
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 2.6e-159 566.2 542 55.5
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.8e-159 565.1 407 68.1
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 2.2e-158 563.1 533 56.7
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 4.2e-157 558.9 523 56.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.0e-155 554.3 514 56.2
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 4.3e-154 548.9 435 61.6
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 6.2e-153 545.0 513 55.6
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 5.1e-147 525.4 497 56.1
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.9e-142 508.8 662 47.0
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 4.3e-138 495.7 460 57.6
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.3e-134 484.2 537 52.0
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 3.3e-122 443.0 328 69.2
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 6.5e-118 428.7 354 62.1
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 2.0e-114 417.2 367 60.8
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.4e-114 416.0 312 66.3
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 5.3e-112 409.1 329 63.8
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.7e-110 404.1 318 65.7
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 2.1e-100 370.5 529 38.8
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 6.1e-100 369.0 318 61.9
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.4e-96 357.1 550 39.3
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.0e-94 349.4 536 39.0
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 6.6e-94 349.0 377 51.2
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 8.6e-94 348.6 360 54.4
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.3e-91 340.5 337 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.0e-90 337.4 528 36.9
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 3.4e-90 336.7 516 37.8
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 5.4e-80 302.8 379 45.9
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.5e-79 300.1 315 50.8
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.8e-67 261.2 197 62.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.7e-62 244.6 148 78.4
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.8e-59 234.6 181 63.0
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 8.4e-57 225.7 168 67.3
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.1e-51 208.8 120 80.8
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.4e-51 208.4 148 64.9
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.3e-49 201.8 122 77.0
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.1e-48 198.7 141 67.4
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 3.5e-47 193.7 201 53.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.1e-43 182.2 582 28.4
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-40 171.8 92 79.3
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.5e-37 161.8 156 57.1
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.9e-37 161.4 100 84.0
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.5e-29 134.4 99 64.6
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.0e-26 124.8 100 60.0
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 2.2e-25 121.3 128 49.2
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 3.2e-24 117.5 126 48.4
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.3e-22 112.1 109 55.0
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-19 102.4 53 83.0
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.1e-19 100.9 78 64.1
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 8.5e-17 92.8 74 59.5
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.4e-16 92.0 78 57.7
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.4e-16 92.0 70 62.9
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.9e-15 86.3 94 52.1
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 1.1e-13 82.4 76 57.9
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.5e-13 81.3 122 39.3
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 4.8e-12 77.0 156 37.8
FvH4_7g08791 Fragaria vesca HOM05D004567 ORTHO05D045614 1.0e-09 69.3 49 75.5
FAN10G2073 Fragaria x ananassa HOM05D004567 ORTHO05D045614 1.4e-08 65.5 49 73.5
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.3e-06 58.2 76 34.2
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 8.8e-06 56.2 34 79.4


User provided reference genes

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