Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 8.2e-67 256.9 129 100.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.6e-20 102.4 57 93.0
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 8.3e-19 97.4 59 86.4
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-18 97.1 57 87.7
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-18 97.1 57 87.7
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.8e-18 96.3 57 87.7
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.8e-18 96.3 57 87.7
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.8e-18 96.3 57 87.7
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.1e-18 95.1 57 84.2
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 9.2e-18 94.0 57 82.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.6e-17 91.7 57 78.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.6e-17 91.7 57 80.7
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 7.8e-17 90.9 57 80.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.0e-16 90.5 57 78.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.7e-16 89.7 57 78.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 2.3e-16 89.4 57 77.2
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.3e-16 89.4 57 75.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 3.0e-16 89.0 56 76.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-16 89.0 57 77.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.9e-16 88.6 57 80.7
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 3.9e-16 88.6 57 80.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 3.9e-16 88.6 57 75.4
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 3.9e-16 88.6 57 77.2
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 5.0e-16 88.2 57 75.4
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 5.0e-16 88.2 57 78.9
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 5.0e-16 88.2 57 77.2
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 8.6e-16 87.4 57 75.4
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 8.6e-16 87.4 57 75.4
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.1e-15 87.0 57 75.4
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-15 87.0 58 74.1
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-15 86.7 57 71.9
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.5e-15 86.7 57 75.4
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.5e-15 86.7 57 71.9
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.9e-15 86.3 57 73.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-15 86.3 57 75.4
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-15 86.3 57 75.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.9e-15 86.3 57 75.4
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.9e-15 86.3 57 75.4
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.5e-15 85.9 57 73.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.5e-15 85.9 57 73.7
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 3.3e-15 85.5 57 77.2
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-15 85.5 55 74.5
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.3e-15 85.5 57 75.4
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.3e-15 85.5 55 72.7
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 4.3e-15 85.1 57 75.4
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 4.3e-15 85.1 57 70.2
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 4.3e-15 85.1 57 71.9
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.6e-15 84.7 57 73.7
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.6e-15 84.7 57 73.7
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.6e-15 84.7 57 77.2
RcHm_v2.0_Chr4g0409641 Rosa chinensis HOM05D001672 ORTHO05D008153 5.6e-15 84.7 57 75.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 7.3e-15 84.3 55 74.5
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 7.3e-15 84.3 55 74.5
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 7.3e-15 84.3 55 74.5
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 7.3e-15 84.3 55 74.5
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.3e-15 84.3 57 73.7
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 7.3e-15 84.3 57 71.9
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 7.3e-15 84.3 57 71.9
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 9.5e-15 84.0 57 75.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.2e-14 83.6 57 68.4
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.2e-14 83.6 57 68.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-14 83.6 57 71.9
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.2e-14 83.6 57 71.9
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.6e-14 83.2 57 68.4
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.6e-14 83.2 57 73.7
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.1e-14 82.8 55 72.7
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.1e-14 82.8 57 71.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.8e-14 82.4 54 77.8
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 66.7
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 71.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 66.7
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 68.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 73.7
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.8e-14 82.4 55 69.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 70.2
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.8e-14 82.4 57 66.7
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.6e-14 82.0 57 68.4
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.6e-14 82.0 57 75.4
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.6e-14 82.0 57 71.9
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 3.6e-14 82.0 59 66.1
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 4.7e-14 81.6 56 69.6
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 4.7e-14 81.6 59 71.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 6.2e-14 81.3 57 70.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.1e-13 80.5 57 70.2
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.1e-13 80.5 57 70.2
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.1e-13 80.5 57 71.9
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.1e-13 80.5 57 70.2
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.4e-13 80.1 56 73.2
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-13 80.1 56 67.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.8e-13 79.7 57 68.4
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.3e-13 79.3 57 70.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.3e-13 79.3 66 62.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 3.1e-13 79.0 57 70.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.1e-13 79.0 57 68.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.1e-13 79.0 57 68.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 5.2e-13 78.2 57 64.9
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.8e-13 77.8 55 67.3
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 8.9e-13 77.4 60 66.7
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 8.9e-13 77.4 57 66.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-12 77.0 57 68.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-12 77.0 57 68.4
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.5e-12 76.6 57 66.7
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.5e-12 76.6 57 63.2
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.5e-12 76.6 57 66.7
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.0e-12 76.3 54 68.5
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.0e-12 76.3 57 64.9
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.0e-12 76.3 56 66.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.6e-12 75.9 57 64.9
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 2.6e-12 75.9 57 63.2
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 4.4e-12 75.1 57 64.9
FvH4_4g12020 Fragaria vesca HOM05D001672 ORTHO05D008153 4.4e-12 75.1 43 83.7
FAN07G0795 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.4e-12 75.1 43 83.7
FAN12G1117 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.4e-12 75.1 43 83.7
FAN12G1718 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.4e-12 75.1 43 83.7
FAN17G0860 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.4e-12 75.1 43 83.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 4.4e-12 75.1 57 63.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.8e-12 74.7 57 66.7
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 5.8e-12 74.7 54 66.7
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 9.8e-12 73.9 46 76.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 9.8e-12 73.9 57 63.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 9.8e-12 73.9 57 63.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.7e-11 73.2 56 67.9
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.7e-11 73.2 57 59.6
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.2e-11 72.8 57 61.4
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.2e-11 72.8 53 77.4
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 2.2e-11 72.8 59 61.0
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.2e-11 72.8 59 61.0
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.2e-11 72.8 59 69.5
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.9e-11 72.4 57 56.1
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-10 70.5 57 57.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.4e-10 70.1 57 59.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.9e-10 69.7 54 63.0
FAN22G1650 Fragaria x ananassa HOM05D001672 ORTHO05D008153 2.4e-10 69.3 50 74.0
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-10 69.3 50 70.0
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.4e-10 69.3 46 76.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.1e-10 68.6 57 57.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 5.4e-10 68.2 49 71.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.4e-10 68.2 57 57.9
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 5.4e-10 68.2 57 57.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 9.2e-10 67.4 57 59.6
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-09 66.6 57 57.9
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-09 66.6 57 57.9
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.7e-09 65.9 46 65.2
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.7e-08 63.2 55 52.7
Prupe.7G049700 Prunus persica HOM05D001672 ORTHO05D008153 3.0e-08 62.4 58 58.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 6.6e-08 61.2 57 50.9
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-07 60.1 45 62.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.5e-07 60.1 45 62.2
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.5e-07 59.3 45 62.2
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.3e-07 58.9 57 49.1
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 2.1e-06 56.2 41 70.7
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 4.7e-06 55.1 54 53.7


User provided reference genes

Program Settings