Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0343391 Rosa chinensis HOM05D000211 ORTHO05D343605 2.8e-32 141.4 71 100.0
FAN20G0822 Fragaria x ananassa HOM05D000211 ORTHO05D002517 9.2e-12 73.2 71 62.0
Prupe.8G151100 Prunus persica HOM05D000211 ORTHO05D002517 1.3e-10 69.3 70 57.1
Dinv16066 Davidia involucrata HOM05D000211 ORTHO05D002517 1.7e-10 68.9 70 57.1
Haze_10315 Corylus avellana HOM05D000211 ORTHO05D002517 5.1e-10 67.4 71 53.5
CSS0002082 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002517 8.6e-10 66.6 70 54.3
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.1e-09 66.2 71 52.1
Manes.07G056300 Manihot esculenta HOM05D000211 ORTHO05D002517 1.1e-09 66.2 72 51.4
Rhsim11G0149900 Rhododendron simsii HOM05D000211 ORTHO05D002517 1.5e-09 65.9 71 52.1
ATR0767G048 Amborella trichopoda HOM05D001189 ORTHO05D001027 1.9e-09 65.5 70 52.9
MELO3C018027.2 Cucumis melo HOM05D000211 ORTHO05D002517 3.3e-09 64.7 71 52.1
SalBow6G4611 Salvia bowleyana HOM05D000211 ORTHO05D002517 7.3e-09 63.5 71 52.1
MD05G1107300 Malus domestica HOM05D000211 ORTHO05D002517 9.5e-09 63.2 71 53.5
Lsat_1_v5_gn_7_84540 Lactuca sativa HOM05D000211 ORTHO05D002517 1.2e-08 62.8 72 48.6
Potri.009G084700 Populus trichocarpa HOM05D000211 ORTHO05D002517 1.6e-08 62.4 71 47.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.6e-08 62.4 71 47.9
Glyma.10G255100 Glycine max HOM05D000211 ORTHO05D002517 2.1e-08 62.0 71 50.7
PGR142G1469 Punica granatum HOM05D000211 ORTHO05D002517 2.1e-08 62.0 71 52.1
Peaxi162Scf00016g03253 Petunia axillaris HOM05D000211 ORTHO05D002517 2.8e-08 61.6 71 49.3
Thecc.02G120700 Theobroma cacao HOM05D000211 ORTHO05D002517 2.8e-08 61.6 71 49.3
Ciclev10028326m.g Citrus clementina HOM05D000211 ORTHO05D002517 3.6e-08 61.2 71 50.7
Eucgr.I02501 Eucalyptus grandis HOM05D000211 ORTHO05D002517 3.6e-08 61.2 70 52.9
CAN.G606.77 Capsicum annuum HOM05D000211 ORTHO05D002517 4.7e-08 60.8 71 49.3
Duzib132G0216 Durio zibethinus HOM05D000211 ORTHO05D002517 4.7e-08 60.8 71 46.5
Gohir.D12G018900 Gossypium hirsutum HOM05D000211 ORTHO05D002517 4.7e-08 60.8 71 46.5
Solyc01g106780.3 Solanum lycopersicum HOM05D000211 ORTHO05D002517 6.2e-08 60.5 71 49.3
Sopen01g049090 Solanum pennellii HOM05D000211 ORTHO05D002517 6.2e-08 60.5 71 49.3
PGSC0003DMG400025734 Solanum tuberosum HOM05D000211 ORTHO05D002517 6.2e-08 60.5 71 49.3
Oeu009661.1 Olea europaea HOM05D000211 ORTHO05D002517 1.1e-07 59.7 68 50.0
Cfa004710 Carpinus fangiana HOM05D000211 ORTHO05D002517 1.4e-07 59.3 71 49.3
COL.COLO4_32477 Corchorus olitorius HOM05D000211 ORTHO05D002517 1.8e-07 58.9 71 47.9
Lj5C221T14 Lonicera japonica HOM05D000211 ORTHO05D002517 1.8e-07 58.9 62 53.2
MD00G1031300 Malus domestica HOM05D000211 ORTHO05D002517 2.4e-07 58.5 71 47.9
ECA234G1182 Erigeron canadensis HOM05D000211 ORTHO05D002517 3.1e-07 58.2 72 44.4
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 3.1e-07 58.2 72 45.8
CsaV3_4G000040 Cucumis sativus L. HOM05D000211 ORTHO05D002517 4.0e-07 57.8 71 47.9
CiPaw.05G021300 Carya illinoinensis HOM05D000211 ORTHO05D002517 5.2e-07 57.4 70 48.6
Nitab4.5_0010974g0010 Nicotiana tabacum HOM05D000211 ORTHO05D002517 5.2e-07 57.4 71 47.9
MSTRG.9942 Avicennia marina HOM05D000211 ORTHO05D002517 6.8e-07 57.0 72 44.4
Actinidia08455 Actinidia chinensis HOM05D000211 ORTHO05D002517 1.2e-06 56.2 72 43.1
Dinv34558 Davidia involucrata HOM05D000211 ORTHO05D002517 1.2e-06 56.2 72 44.4
Nn6g32055 Nelumbo nucifera HOM05D000211 ORTHO05D002517 1.5e-06 55.8 69 50.7
Nitab4.5_0000772g0060 Nicotiana tabacum HOM05D000211 ORTHO05D002517 1.5e-06 55.8 71 49.3
TAR625G0525 Trochodendron aralioides HOM05D000211 ORTHO05D002517 1.5e-06 55.8 70 50.0
Aqoxy6G01505 Aquilegia oxysepala HOM05D000211 ORTHO05D002517 2.0e-06 55.5 69 44.9
Migut.G00405 Erythranthe guttata HOM05D000211 ORTHO05D002517 2.0e-06 55.5 72 44.4
Potri.008G159700 Populus trichocarpa HOM05D000211 ORTHO05D002517 2.0e-06 55.5 72 43.1
TWI53G1723 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 2.0e-06 55.5 72 44.4
Actinidia05478 Actinidia chinensis HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 41.7
CANSAT25G3071 Cannabis sativa HOM05D000211 ORTHO05D002517 2.6e-06 55.1 71 46.5
HanXRQChr04g0101661 Helianthus annuus HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 41.7
Nitab4.5_0000941g0100 Nicotiana tabacum HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 43.1
Nitab4.5_0002398g0070 Nicotiana tabacum HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 43.1
Sabra08G0121700 Salix brachista HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 43.1
TAR262G0002 Trochodendron aralioides HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 43.1
TAR365G0034 Trochodendron aralioides HOM05D000211 ORTHO05D002517 2.6e-06 55.1 72 43.1
MD13G1202600 Malus domestica HOM05D000211 ORTHO05D002517 3.4e-06 54.7 72 44.4
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.4e-06 54.7 71 46.5
Atru.chr4.2316 Acer truncatum HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
CSS0010452 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 41.7
CAN.G749.13 Capsicum annuum HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
Cpa.g.sc106.27 Carica papaya HOM05D000211 ORTHO05D002517 4.4e-06 54.3 70 47.1
CiPaw.02G118500 Carya illinoinensis HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
Manes.07G056100 Manihot esculenta HOM05D000211 ORTHO05D002517 4.4e-06 54.3 71 45.1
Oeu009113.1 Olea europaea HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 41.7
Peaxi162Scf00788g00013 Petunia axillaris HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
RcHm_v2.0_Chr6g0247971 Rosa chinensis HOM05D000211 ORTHO05D002517 4.4e-06 54.3 52 63.5
Solyc09g082970.3 Solanum lycopersicum HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
Sopen09g031830 Solanum pennellii HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
TWI09G1205 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 44.4
TWI73G1169 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 44.4
TAR636G0152 Trochodendron aralioides HOM05D000211 ORTHO05D002517 4.4e-06 54.3 72 43.1
CiPaw.01G193400 Carya illinoinensis HOM05D000211 ORTHO05D002517 5.8e-06 53.9 72 43.1
Gohir.A12G018300 Gossypium hirsutum HOM05D000211 ORTHO05D002517 5.8e-06 53.9 71 43.7
RcHm_v2.0_Chr1g0322031 Rosa chinensis HOM05D000211 ORTHO05D002517 5.8e-06 53.9 73 43.8
Ca_09885_v3 Cicer arietinum L. HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 41.7
Haze_11256 Corylus avellana HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 43.1
Eucgr.H00506 Eucalyptus grandis HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 44.4
Gorai.008G019200 Gossypium raimondii HOM05D000211 ORTHO05D002517 7.6e-06 53.5 71 43.7
Lalb_Chr06g0168931 Lupinus albus HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 41.7
Medtr1g076540 Medicago truncatula HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 41.7
QL06p000493 Quercus lobata HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 41.7
Sc13g0004870 Simmondsia chinensis HOM05D000211 ORTHO05D002517 7.6e-06 53.5 72 43.1
CDE06G0590 Ceratophyllum demersum HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7
CDE07G1718 Ceratophyllum demersum HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7
FvH4_2g03100 Fragaria vesca HOM05D000211 ORTHO05D002517 9.9e-06 53.1 52 61.5
FAN15G1968 Fragaria x ananassa HOM05D000211 ORTHO05D002517 9.9e-06 53.1 52 61.5
FAN24G2586 Fragaria x ananassa HOM05D000211 ORTHO05D002517 9.9e-06 53.1 52 61.5
FAN27G0522 Fragaria x ananassa HOM05D000211 ORTHO05D002517 9.9e-06 53.1 52 61.5
Lj6A651G58 Lonicera japonica HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7
Manes.03G171200 Manihot esculenta HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7
Nn1g02515 Nelumbo nucifera HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7
Potri.010G080700 Populus trichocarpa HOM05D000211 ORTHO05D002517 9.9e-06 53.1 72 41.7


User provided reference genes

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