Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-30 136.0 67 100.0
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 1.6e-26 122.1 72 84.7
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 4.0e-25 117.5 72 80.6
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 4.0e-25 117.5 72 80.6
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 9.0e-25 116.3 84 72.6
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.5e-24 115.5 84 72.6
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.5e-24 115.5 72 79.2
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 3.4e-24 114.4 72 79.2
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 4.5e-24 114.0 72 79.2
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 9.9e-24 112.8 72 77.8
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 1.7e-23 112.1 72 75.0
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.7e-23 112.1 72 73.6
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 2.2e-23 111.7 72 77.8
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 2.2e-23 111.7 72 75.0
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.9e-23 111.3 72 77.8
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 2.9e-23 111.3 75 74.7
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.9e-23 111.3 75 74.7
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 2.9e-23 111.3 72 77.8
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.9e-23 111.3 72 77.8
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.9e-23 111.3 72 75.0
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 4.9e-23 110.5 72 75.0
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 8.4e-23 109.8 72 76.4
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 8.4e-23 109.8 72 72.2
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.1e-22 109.4 72 73.6
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.1e-22 109.4 72 73.6
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.1e-22 109.4 72 76.4
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.4e-22 109.0 72 75.0
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 3.2e-22 107.8 74 68.9
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 3.2e-22 107.8 72 72.2
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 3.2e-22 107.8 72 72.2
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 3.2e-22 107.8 72 70.8
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 4.2e-22 107.5 72 72.2
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 4.2e-22 107.5 72 70.8
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 5.4e-22 107.1 72 69.4
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 5.4e-22 107.1 72 70.8
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 7.1e-22 106.7 72 75.0
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.2e-21 105.9 72 72.2
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.6e-21 105.5 72 70.8
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 2.7e-21 104.8 72 68.1
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.7e-21 104.8 72 70.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 3.5e-21 104.4 74 68.9
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 3.5e-21 104.4 74 68.9
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.5e-21 104.4 72 66.7
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 3.5e-21 104.4 72 69.4
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 4.6e-21 104.0 72 69.4
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 4.6e-21 104.0 72 66.7
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 4.6e-21 104.0 72 66.7
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 7.9e-21 103.2 79 64.6
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 7.9e-21 103.2 72 66.7
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.0e-20 102.8 72 68.1
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.8e-20 102.1 71 67.6
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 2.3e-20 101.7 72 68.1
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 2.3e-20 101.7 72 68.1
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 2.3e-20 101.7 72 66.7
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 2.3e-20 101.7 72 66.7
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 5.1e-20 100.5 72 65.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 5.1e-20 100.5 72 65.3
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 6.7e-20 100.1 72 65.3
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 6.7e-20 100.1 70 68.6
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 2.5e-19 98.2 72 63.9
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 3.3e-19 97.8 72 59.7
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 5.6e-19 97.1 70 64.3
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 1.6e-18 95.5 72 59.7
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.1e-18 95.1 72 58.3
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.8e-18 94.7 72 56.9
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 4.8e-18 94.0 91 52.7
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 8.1e-18 93.2 66 68.2
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.8e-17 92.0 76 57.9
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 3.1e-17 91.3 85 56.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 4.0e-17 90.9 46 95.7
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 9.0e-17 89.7 66 62.1
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 1.5e-16 89.0 46 93.5
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.6e-16 88.2 103 45.6
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 2.6e-16 88.2 45 93.3
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 2.6e-16 88.2 74 62.2
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 3.4e-16 87.8 71 60.6
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 4.5e-16 87.4 46 91.3
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 4.5e-16 87.4 68 58.8
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 1.7e-15 85.5 105 43.8
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 57.7
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.2e-15 85.1 72 56.9
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.2e-15 85.1 71 59.2
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 4.9e-15 84.0 72 55.6
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 4.9e-15 84.0 71 56.3
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 4.9e-15 84.0 71 56.3
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 4.9e-15 84.0 71 56.3
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 4.6e-13 77.4 45 75.6
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.3e-12 75.9 45 68.9
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.8e-12 75.5 45 71.1
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 6.7e-12 73.6 43 74.4
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 8.7e-12 73.2 52 71.2
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.5e-11 72.4 45 64.4
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.5e-11 72.4 45 64.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.5e-11 71.6 45 66.7
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.5e-11 71.6 45 66.7
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 9.6e-11 69.7 71 50.7
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 1.4e-09 65.9 39 74.4
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 6.9e-09 63.5 45 57.8
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.0e-08 62.0 65 50.8
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 1.7e-07 58.9 72 37.5
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 1.7e-07 58.9 72 36.1
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 1.1e-06 56.2 70 34.3
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 7.1e-06 53.5 54 55.6


User provided reference genes

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