Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342801 Rosa chinensis HOM05D003355 ORTHO05D025519 6.0e-132 474.2 236 100.0
FAN10G3381 Fragaria x ananassa HOM05D020185 ORTHO05D025519 3.2e-45 186.0 171 60.2
FvH4_7g08170 Fragaria vesca HOM05D020185 ORTHO05D025519 1.2e-44 184.1 173 60.1
FAN06G2559 Fragaria x ananassa HOM05D020185 ORTHO05D025519 5.9e-39 165.2 214 48.1
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 5.8e-18 95.5 163 38.0
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 7.5e-18 95.1 176 35.2
RcHm_v2.0_Chr1g0368121 Rosa chinensis HOM05D003355 ORTHO05D019199 2.9e-17 93.2 175 34.3
RcHm_v2.0_Chr1g0368141 Rosa chinensis HOM05D003355 ORTHO05D019199 6.4e-17 92.0 173 34.7
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 7.1e-16 88.6 138 35.5
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 6.0e-15 85.5 171 33.3
FvH4_3g45301 Fragaria vesca HOM05D003355 ORTHO05D013882 1.7e-14 84.0 83 43.4
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 3.0e-14 83.2 83 39.8
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 3.9e-14 82.8 162 34.6
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 6.6e-14 82.0 180 34.4
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.1e-13 81.3 83 39.8
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 1.5e-13 80.9 161 33.5
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 5.6e-13 79.0 150 34.0
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-12 76.6 171 28.1
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 4.7e-12 75.9 186 33.3
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 2.3e-11 73.6 133 33.8
FvH4_6g02030 Fragaria vesca HOM05D017208 ORTHO05D025447 4.0e-11 72.8 175 28.6
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 8.9e-11 71.6 182 29.7
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 1.5e-10 70.9 158 31.6
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-10 70.1 188 30.3
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 3.4e-10 69.7 190 30.5
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 4.4e-10 69.3 179 28.5
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 7.6e-10 68.6 188 30.3
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 7.6e-10 68.6 188 30.3
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 7.6e-10 68.6 188 30.3
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 7.6e-10 68.6 188 30.3
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 7.6e-10 68.6 178 30.9
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 7.6e-10 68.6 178 30.9
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 9.9e-10 68.2 178 33.7
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.2e-09 67.0 178 32.6
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 2.2e-09 67.0 178 32.6
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 2.2e-09 67.0 177 30.5
FAN04G2164 Fragaria x ananassa HOM05D003355 ORTHO05D015652 2.9e-09 66.6 176 27.3
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 2.9e-09 66.6 177 29.9
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 2.9e-09 66.6 177 31.1
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 2.9e-09 66.6 177 31.1
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 2.9e-09 66.6 177 31.1
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 3.7e-09 66.2 178 31.5
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 6.4e-09 65.5 177 31.1
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 6.4e-09 65.5 166 31.9
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 6.4e-09 65.5 166 31.9
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 6.4e-09 65.5 166 33.1
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 6.4e-09 65.5 197 28.9
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 8.4e-09 65.1 177 30.5
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 8.4e-09 65.1 181 30.9
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 8.4e-09 65.1 177 31.1
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.1e-08 64.7 177 30.5
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.1e-08 64.7 181 31.5
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 1.4e-08 64.3 177 30.5
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 1.4e-08 64.3 188 30.3
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 1.9e-08 63.9 177 30.5
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 1.9e-08 63.9 201 27.9
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 1.9e-08 63.9 161 32.3
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 2.4e-08 63.5 177 31.1
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 2.4e-08 63.5 178 32.0
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 2.4e-08 63.5 177 29.9
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 3.2e-08 63.2 178 30.9
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 3.2e-08 63.2 178 30.3
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 3.2e-08 63.2 154 29.9
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 4.1e-08 62.8 172 29.7
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 4.1e-08 62.8 177 29.9
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 4.1e-08 62.8 177 29.9
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 4.1e-08 62.8 178 31.5
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 4.1e-08 62.8 189 28.0
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 4.1e-08 62.8 166 30.7
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 4.1e-08 62.8 177 31.1
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 5.4e-08 62.4 190 30.5
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 5.4e-08 62.4 178 30.9
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 7.1e-08 62.0 177 30.5
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 7.1e-08 62.0 177 28.8
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 7.1e-08 62.0 177 29.9
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 7.1e-08 62.0 177 28.8
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 7.1e-08 62.0 178 29.8
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 7.1e-08 62.0 178 30.9
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 9.2e-08 61.6 177 28.8
MD03G1170900 Malus domestica HOM05D003355 ORTHO05D015652 9.2e-08 61.6 179 27.4
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 1.6e-07 60.8 178 30.3
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 2.1e-07 60.5 177 28.2
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 2.1e-07 60.5 179 30.2
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 2.1e-07 60.5 179 30.2
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 2.1e-07 60.5 178 29.8
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 2.7e-07 60.1 178 30.3
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 2.7e-07 60.1 179 30.2
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 2.7e-07 60.1 97 33.0
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 2.7e-07 60.1 177 27.7
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 2.7e-07 60.1 190 29.5
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 2.7e-07 60.1 190 29.5
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 2.7e-07 60.1 169 31.4
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 2.7e-07 60.1 179 31.8
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 3.5e-07 59.7 175 31.4
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 3.5e-07 59.7 178 30.3
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 3.5e-07 59.7 194 28.4
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 4.6e-07 59.3 177 27.7
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 4.6e-07 59.3 178 30.3
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 4.6e-07 59.3 178 30.3
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 4.6e-07 59.3 193 29.0
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 6.0e-07 58.9 178 28.1
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 6.0e-07 58.9 178 30.3
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 6.0e-07 58.9 177 28.2
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 6.0e-07 58.9 177 27.7
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 6.0e-07 58.9 154 31.8
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 7.8e-07 58.5 178 29.2
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 7.8e-07 58.5 178 29.2
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 7.8e-07 58.5 178 29.2
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 7.8e-07 58.5 177 28.8
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 1.0e-06 58.2 177 28.2
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 1.0e-06 58.2 177 28.2
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 1.3e-06 57.8 178 29.8
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 1.3e-06 57.8 178 29.8
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 1.3e-06 57.8 177 27.7
FAN14G2936 Fragaria x ananassa HOM05D012211 ORTHO05D029661 1.3e-06 57.8 172 29.7
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 1.3e-06 57.8 178 28.7
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 1.7e-06 57.4 179 30.7
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 1.7e-06 57.4 169 30.2
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 2.3e-06 57.0 177 29.4
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 3.0e-06 56.6 177 27.7
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 3.0e-06 56.6 177 27.7
FAN05G5214 Fragaria x ananassa HOM05D017208 ORTHO05D025447 3.0e-06 56.6 119 31.9
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 3.0e-06 56.6 177 28.2
Prupe.6G307800 Prunus persica HOM05D003355 ORTHO05D013882 3.9e-06 56.2 136 28.7
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 5.1e-06 55.8 177 28.8
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 6.6e-06 55.5 154 31.2
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 6.6e-06 55.5 150 31.3
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 6.6e-06 55.5 177 27.1
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 6.6e-06 55.5 89 31.5
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 8.6e-06 55.1 178 28.7


User provided reference genes

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