Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.4e-179 632.9 328 100.0
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-175 619.8 327 97.6
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.7e-175 618.6 327 97.2
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-174 616.3 327 96.9
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 6.9e-171 604.0 326 96.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 7.2e-168 594.0 327 92.4
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 2.1e-167 592.4 327 92.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.0e-166 590.1 327 92.4
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.0e-166 590.1 327 92.0
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.0e-166 590.1 327 91.1
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 2.3e-166 589.0 325 92.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 3.0e-166 588.6 327 90.8
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 8.8e-166 587.0 327 91.7
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.5e-165 586.3 325 91.7
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.5e-165 586.3 327 90.5
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.0e-165 585.9 327 90.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 3.3e-165 585.1 327 91.4
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 7.4e-165 583.9 327 90.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 9.7e-165 583.6 326 91.4
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.7e-164 582.8 325 92.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.7e-164 582.8 325 92.3
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.7e-164 582.8 327 90.5
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-164 581.6 327 93.0
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.8e-164 581.3 326 91.7
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.8e-163 579.3 326 91.4
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 2.4e-163 578.9 326 90.5
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 3.1e-163 578.6 327 90.2
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 3.1e-163 578.6 327 89.3
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.3e-161 573.2 327 89.9
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.8e-161 571.6 327 87.5
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 6.5e-161 570.9 327 87.5
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.5e-161 570.9 327 88.4
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 8.5e-161 570.5 327 89.3
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.9e-160 569.3 327 86.9
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.5e-160 568.9 327 90.2
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 2.5e-160 568.9 327 89.0
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.2e-160 568.5 327 89.3
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 4.2e-160 568.2 327 88.7
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.2e-160 568.2 327 87.8
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.6e-159 566.2 327 88.7
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.1e-159 565.8 333 88.3
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 2.7e-159 565.5 327 88.1
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.7e-159 564.7 327 86.5
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.7e-159 564.7 327 86.5
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 8.0e-159 563.9 327 85.9
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 8.0e-159 563.9 327 88.7
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.0e-158 563.5 326 87.7
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-158 563.5 327 86.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.0e-158 563.5 327 88.4
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.0e-158 563.5 327 88.4
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.0e-158 563.5 327 86.2
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-158 562.8 327 87.5
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.3e-158 562.4 327 87.2
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 2.3e-158 562.4 327 85.9
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.3e-158 562.4 327 85.9
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.0e-158 561.6 327 87.5
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 4.0e-158 561.6 327 85.6
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.7e-158 560.8 327 89.0
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 6.7e-158 560.8 327 85.3
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 6.7e-158 560.8 327 85.6
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 8.8e-158 560.5 327 86.9
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 8.8e-158 560.5 327 85.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 87.2
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.1e-157 560.1 327 85.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.5e-157 559.7 327 85.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.5e-157 559.7 325 87.7
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.6e-157 558.9 327 88.7
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.6e-157 558.9 325 86.2
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.3e-157 558.5 363 82.1
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 7.5e-157 557.4 327 86.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 7.5e-157 557.4 354 81.4
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 9.7e-157 557.0 327 86.2
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.3e-156 556.6 326 85.6
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.3e-156 556.6 328 85.1
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.3e-156 556.6 381 78.0
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 4.8e-156 554.7 328 84.8
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 6.3e-156 554.3 327 86.2
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 8.2e-156 553.9 327 86.2
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.8e-155 552.7 328 84.8
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 5.3e-155 551.2 327 85.6
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 5.3e-155 551.2 327 87.5
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.6e-154 549.7 327 85.0
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.3e-153 546.6 451 67.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.7e-153 546.2 327 86.5
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 6.5e-153 544.3 329 84.2
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.9e-152 542.7 329 83.9
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.2e-152 541.6 314 86.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.6e-151 538.5 325 84.3
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 3.0e-150 535.4 327 83.5
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 3.4e-149 531.9 328 84.5
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.4e-149 531.9 327 85.0
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.8e-148 528.9 327 87.2
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.8e-147 526.2 304 87.5
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.0e-145 520.4 327 81.0
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.2e-145 519.2 328 81.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 2.7e-143 512.3 327 81.7
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 2.3e-142 509.2 300 84.7
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.8e-142 507.7 373 75.3
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.8e-139 499.6 330 77.0
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.1e-139 498.8 327 76.5
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-136 489.6 296 85.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 7.3e-136 487.6 327 79.2
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 9.8e-133 477.2 326 73.9
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.2e-132 476.1 326 76.7
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 6.4e-132 474.6 328 75.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.9e-128 463.0 279 83.5
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.2e-127 460.3 332 74.4
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.7e-116 423.3 323 70.3
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 3.0e-113 412.5 324 61.4
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 8.6e-113 411.0 234 88.9
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.3e-110 402.9 318 63.2
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.5e-109 400.2 324 64.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-107 393.7 233 85.0
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 8.6e-105 384.4 319 66.1
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.5e-104 383.6 272 74.6
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.9e-99 366.7 328 67.4
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 1.4e-94 350.5 197 92.9
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 4.2e-91 339.0 333 60.4
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 7.1e-91 338.2 235 71.1
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 3.5e-90 335.9 224 76.8
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 6.6e-89 331.6 220 81.8
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 3.6e-87 325.9 220 80.0
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 4.2e-83 312.4 220 78.6
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.3e-81 306.6 167 90.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.7e-76 290.4 333 46.8
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 2.5e-72 276.6 159 89.3
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.4e-69 266.2 327 52.3
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.4e-69 266.2 159 83.0
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.7e-66 256.5 267 56.2
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.5e-64 250.0 131 94.7
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.4e-59 234.2 130 91.5
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-46 191.0 99 94.9
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.9e-44 183.3 159 64.8
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 2.7e-42 176.8 147 63.9
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-39 167.5 87 98.9
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.8e-38 164.1 181 54.7
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 4.5e-37 159.5 103 80.6
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.0e-36 158.3 87 89.7
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.6e-32 143.7 77 93.5
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 3.4e-32 143.3 88 78.4
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 3.7e-31 139.8 86 86.0
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-31 139.8 69 94.2
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 5.9e-29 132.5 82 78.0
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 5.0e-28 129.4 74 85.1
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 5.0e-28 129.4 91 74.7
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.0e-25 119.8 75 77.3
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-24 118.2 151 47.0
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 2.0e-24 117.5 62 98.4
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.4e-24 116.3 69 85.5
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 8.6e-20 102.1 61 86.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 4.7e-10 69.7 85 51.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.4e-08 63.2 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9


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