Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342671 Rosa chinensis HOM05D000038 ORTHO05D030549 7.7e-58 226.9 110 100.0
RcHm_v2.0_Chr7g0227411 Rosa chinensis HOM05D000038 ORTHO05D030549 2.9e-36 155.2 82 92.7
RcHm_v2.0_Chr7g0241321 Rosa chinensis HOM05D000038 ORTHO05D000423 5.4e-35 151.0 79 91.1
RcHm_v2.0_Chr7g0227361 Rosa chinensis HOM05D000038 ORTHO05D030549 2.1e-34 149.1 82 90.2
RcHm_v2.0_Chr7g0227561 Rosa chinensis HOM05D000038 ORTHO05D000423 8.9e-22 107.1 82 67.1
RcHm_v2.0_Chr7g0227271 Rosa chinensis HOM05D000038 ORTHO05D009868 9.9e-21 103.6 54 90.7
RcHm_v2.0_Chr7g0227571 Rosa chinensis HOM05D000038 ORTHO05D000423 3.8e-20 101.7 82 65.9
FAN04G1645 Fragaria x ananassa HOM05D000038 ORTHO05D000423 5.4e-19 97.8 82 61.0
QL09p048328 Quercus lobata HOM05D000038 ORTHO05D000423 4.6e-18 94.7 87 56.3
QL09p048339 Quercus lobata HOM05D000038 ORTHO05D000423 4.6e-18 94.7 87 56.3
QL09p048311 Quercus lobata HOM05D000038 ORTHO05D000423 2.3e-17 92.4 87 56.3
QL10p039084 Quercus lobata HOM05D000038 ORTHO05D000423 3.0e-17 92.0 87 55.2
Hma1.2p1_0057F.1_g031970 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 4.3e-16 88.2 84 56.0
Hma1.2p1_2827F.1_g329140 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 4.3e-16 88.2 84 56.0
QL11p020767 Quercus lobata HOM05D000038 ORTHO05D000423 9.6e-16 87.0 86 54.7
QL10p052623 Quercus lobata HOM05D000038 ORTHO05D000423 1.6e-15 86.3 87 55.2
Nn5g28155 Nelumbo nucifera HOM05D000038 ORTHO05D000423 2.8e-15 85.5 82 54.9
Thhalv10027637m.g Eutrema salsugineum HOM05D000038 ORTHO05D000423 4.7e-15 84.7 86 54.7
CiPaw.03G254400 Carya illinoinensis HOM05D000038 ORTHO05D000423 6.2e-15 84.3 87 56.3
Haze_00485 Corylus avellana HOM05D000038 ORTHO05D000423 8.1e-15 84.0 84 54.8
Hma1.2p1_0057F.1_g031960 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 8.1e-15 84.0 84 53.6
CARHR217390 Cardamine hirsuta HOM05D000038 ORTHO05D000423 1.4e-14 83.2 85 50.6
Peaxi162Scf62146g00001 Petunia axillaris HOM05D000038 ORTHO05D000423 1.4e-14 83.2 82 47.6
DCAR_014110 Daucus carota HOM05D000038 ORTHO05D000423 1.8e-14 82.8 80 57.5
Duzib116G0346 Durio zibethinus HOM05D000038 ORTHO05D000423 4.0e-14 81.6 82 53.7
vmacro23168 Vaccinium macrocarpon HOM05D000038 ORTHO05D000423 4.0e-14 81.6 83 53.0
AT5G35370 Arabidopsis thaliana HOM05D000038 ORTHO05D000423 5.2e-14 81.3 85 52.9
Carub.0007s3119 Capsella rubella HOM05D000038 ORTHO05D000423 6.9e-14 80.9 85 54.1
Cpa.g.sc36.26 Carica papaya HOM05D000038 ORTHO05D000423 6.9e-14 80.9 85 55.3
Rhsim06G0106000 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.9e-14 80.9 82 51.2
Rhsim08G0001300 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.9e-14 80.9 84 52.4
Ciclev10000351m.g Citrus clementina HOM05D000038 ORTHO05D000423 1.2e-13 80.1 85 54.1
Manes.02G160900 Manihot esculenta HOM05D000038 ORTHO05D000423 1.2e-13 80.1 84 54.8
Lj1g0002739 Lotus japonicus HOM05D000038 ORTHO05D000423 1.5e-13 79.7 85 52.9
TWI56G0409 Tripterygium wilfordii HOM05D000038 ORTHO05D000423 2.0e-13 79.3 87 51.7
TWI79G0429 Tripterygium wilfordii HOM05D000038 ORTHO05D000423 2.0e-13 79.3 85 51.8
arahy.Tifrunner.gnm1.ann1.FPVE10 Arachis hypogaea HOM05D000038 ORTHO05D000423 2.6e-13 79.0 85 52.9
Potri.019G013797 Populus trichocarpa HOM05D000038 ORTHO05D000423 2.6e-13 79.0 84 54.8
Actinidia16535 Actinidia chinensis HOM05D000038 ORTHO05D000423 3.4e-13 78.6 84 52.4
Aa31LG6G9150 Aethionema arabicum HOM05D000038 ORTHO05D000423 3.4e-13 78.6 85 50.6
Gohir.A05G233100 Gossypium hirsutum HOM05D000038 ORTHO05D000423 3.4e-13 78.6 85 50.6
VMungo1309G1683 Vigna mungo HOM05D000038 ORTHO05D000423 3.4e-13 78.6 85 49.4
AL7G44170 Arabidopsis lyrata HOM05D000038 ORTHO05D000423 4.4e-13 78.2 85 51.8
Duzib093G0782 Durio zibethinus HOM05D000038 ORTHO05D000423 4.4e-13 78.2 78 52.6
Lalb_Chr23g0270921 Lupinus albus HOM05D000038 ORTHO05D000423 4.4e-13 78.2 85 52.9
Lalb_Chr23g0270951 Lupinus albus HOM05D000038 ORTHO05D000423 4.4e-13 78.2 85 52.9
MBI06_g02574_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 5.8e-13 77.8 85 50.6
TPR.G19875 Trifolium pratense HOM05D000038 ORTHO05D000423 5.8e-13 77.8 88 48.9
Gohir.D06G043400 Gossypium hirsutum HOM05D000038 ORTHO05D000423 7.6e-13 77.4 83 53.0
Gorai.010G048500 Gossypium raimondii HOM05D000038 ORTHO05D000423 7.6e-13 77.4 83 53.0
Rhsim02G0074200 Rhododendron simsii HOM05D000038 ORTHO05D000423 7.6e-13 77.4 96 46.9
Sc01g0001380 Simmondsia chinensis HOM05D000038 ORTHO05D000423 7.6e-13 77.4 80 55.0
CAN.G676.45 Capsicum annuum HOM05D000038 ORTHO05D000423 9.9e-13 77.0 84 50.0
Psat5g135200 Pisum sativum HOM05D000038 ORTHO05D000423 9.9e-13 77.0 88 48.9
Rhsim06G0105900 Rhododendron simsii HOM05D000038 ORTHO05D000423 9.9e-13 77.0 82 51.2
Sabra19G0006700 Salix brachista HOM05D000038 ORTHO05D000423 9.9e-13 77.0 84 53.6
Cpa.g.sc37.80 Carica papaya HOM05D000038 ORTHO05D000423 1.3e-12 76.6 85 52.9
Oeu050893.3 Olea europaea HOM05D000038 ORTHO05D000423 1.3e-12 76.6 87 49.4
QL05p051451 Quercus lobata HOM05D000038 ORTHO05D000423 1.3e-12 76.6 82 51.2
ClCG11G015580 Citrullus lanatus HOM05D000038 ORTHO05D000423 1.7e-12 76.3 85 50.6
MELO3C010458.2 Cucumis melo HOM05D000038 ORTHO05D000423 1.7e-12 76.3 85 50.6
CsaV3_4G028440 Cucumis sativus L. HOM05D000038 ORTHO05D000423 1.7e-12 76.3 85 50.6
Gorai.009G243800 Gossypium raimondii HOM05D000038 ORTHO05D000423 1.7e-12 76.3 85 50.6
PSO170G6128 Papaver somniferum HOM05D000038 ORTHO05D000423 1.7e-12 76.3 84 51.2
PSO528G0177 Papaver somniferum HOM05D000038 ORTHO05D000423 1.7e-12 76.3 84 51.2
Potri.002G086500 Populus trichocarpa HOM05D000038 ORTHO05D000423 1.7e-12 76.3 83 51.8
Rhsim06G0106200 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.7e-12 76.3 84 50.0
RhsimUnG0160800 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.7e-12 76.3 93 50.5
Thecc.08G120900 Theobroma cacao HOM05D000038 ORTHO05D000423 1.7e-12 76.3 85 52.9
Phvul.009G122600 Phaseolus vulgaris HOM05D000038 ORTHO05D000423 2.2e-12 75.9 79 50.6
Rhsim06G0105600 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.2e-12 75.9 82 48.8
CANSAT25G3382 Cannabis sativa HOM05D000038 ORTHO05D000423 2.9e-12 75.5 83 49.4
Glyma.06G110700 Glycine max HOM05D000038 ORTHO05D000423 2.9e-12 75.5 85 49.4
Sabra02G0067900 Salix brachista HOM05D000038 ORTHO05D000423 2.9e-12 75.5 82 51.2
Sabra19G0006600 Salix brachista HOM05D000038 ORTHO05D000423 2.9e-12 75.5 84 53.6
Eucgr.F03765 Eucalyptus grandis HOM05D000038 ORTHO05D000423 3.8e-12 75.1 83 48.2
Gohir.D05G235500 Gossypium hirsutum HOM05D000038 ORTHO05D000423 3.8e-12 75.1 85 49.4
QL05p051411 Quercus lobata HOM05D000038 ORTHO05D000423 3.8e-12 75.1 82 50.0
Rhsim02G0075100 Rhododendron simsii HOM05D000038 ORTHO05D000423 3.8e-12 75.1 85 52.9
CSS0019395 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 47.6
CSS0047491 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 47.6
FvH4_2g26490 Fragaria vesca HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 51.2
FAN20G0448 Fragaria x ananassa HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 51.2
FAN24G1726 Fragaria x ananassa HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 51.2
FAN27G2287 Fragaria x ananassa HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 51.2
Nitab4.5_0004554g0040 Nicotiana tabacum HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 47.6
Nitab4.5_0029384g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000423 4.9e-12 74.7 82 47.6
CAN.G2.39 Capsicum annuum HOM05D000038 ORTHO05D000423 6.4e-12 74.3 82 47.6
Gohir.A06G042401 Gossypium hirsutum HOM05D000038 ORTHO05D000423 6.4e-12 74.3 83 50.6
Rhsim02G0073800 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.4e-12 74.3 85 51.8
PGSC0003DMG400000915 Solanum tuberosum HOM05D000038 ORTHO05D000423 6.4e-12 74.3 85 45.9
PGSC0003DMG400027233 Solanum tuberosum HOM05D000038 ORTHO05D000423 6.4e-12 74.3 85 44.7
BcaC04g22007 Brassica carinata HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
BcaNung05257 Brassica carinata HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
A09p19550 Brassica napus HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
C09p24920 Brassica napus HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
BolC9t55383H Brassica oleracea HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
BraA09t37569Z Brassica rapa HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 50.0
CDE03G0410 Ceratophyllum demersum HOM05D000038 ORTHO05D000423 1.1e-11 73.6 85 49.4
Medtr3g072800 Medicago truncatula HOM05D000038 ORTHO05D000423 1.1e-11 73.6 88 48.9
Peaxi162Scf00451g00722 Petunia axillaris HOM05D000038 ORTHO05D000423 1.1e-11 73.6 85 44.7
PGR042G0291 Punica granatum HOM05D000038 ORTHO05D000423 1.1e-11 73.6 82 46.3
Sp7g08290 Schrenkiella parvula HOM05D000038 ORTHO05D000423 1.1e-11 73.6 86 51.2
Ah.05g172250 Amaranthus hybridus HOM05D000038 ORTHO05D000423 1.4e-11 73.2 89 49.4
Ciclev10024976m.g Citrus clementina HOM05D000038 ORTHO05D000423 1.4e-11 73.2 88 47.7
CsaV3_4G027530 Cucumis sativus L. HOM05D000038 ORTHO05D000423 1.4e-11 73.2 82 51.2
Solyc04g015460.4 Solanum lycopersicum HOM05D000038 ORTHO05D000423 1.4e-11 73.2 85 43.5
Sopen04g007510 Solanum pennellii HOM05D000038 ORTHO05D000423 1.4e-11 73.2 85 43.5
arahy.Tifrunner.gnm1.ann1.DQ3LYR Arachis hypogaea HOM05D000038 ORTHO05D000423 1.9e-11 72.8 91 45.1
Migut.N03299 Erythranthe guttata HOM05D000038 ORTHO05D000423 1.9e-11 72.8 85 50.6
Oeu053142.1 Olea europaea HOM05D000038 ORTHO05D000423 1.9e-11 72.8 86 47.7
Sed0004933 Sechium edule HOM05D000038 ORTHO05D000423 2.4e-11 72.4 85 49.4
Ca_15207_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000423 3.2e-11 72.0 90 46.7
MELO3C003255.2 Cucumis melo HOM05D000038 ORTHO05D000423 3.2e-11 72.0 82 51.2
FAN15G2869 Fragaria x ananassa HOM05D000038 ORTHO05D000423 3.2e-11 72.0 82 50.0
Gohir.A08G017008 Gossypium hirsutum HOM05D000038 ORTHO05D000423 3.2e-11 72.0 82 50.0
Aqoxy5G00413 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 4.2e-11 71.6 82 48.8
Haze_25415 Corylus avellana HOM05D000038 ORTHO05D000423 4.2e-11 71.6 85 50.6
SalBow1G5453 Salvia bowleyana HOM05D000038 ORTHO05D000423 4.2e-11 71.6 82 51.2
Sopen11g007810 Solanum pennellii HOM05D000038 ORTHO05D000423 4.2e-11 71.6 85 45.9
RhsimUnG0047300 Rhododendron simsii HOM05D000038 ORTHO05D000423 5.4e-11 71.2 85 50.6
THA.LOC104817131 Tarenaya hassleriana HOM05D000038 ORTHO05D000423 5.4e-11 71.2 86 46.5
Migut.H00810 Erythranthe guttata HOM05D000038 ORTHO05D000423 7.1e-11 70.9 87 44.8
Gorai.004G024400 Gossypium raimondii HOM05D000038 ORTHO05D000423 9.3e-11 70.5 82 47.6
Rhsim02G0074400 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.2e-10 70.1 85 51.8
Rhsim02G0075000 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.2e-10 70.1 85 50.6
HanXRQChr12g0379101 Helianthus annuus HOM05D000038 ORTHO05D000423 1.6e-10 69.7 87 47.1
BcaB07g31086 Brassica carinata HOM05D000038 ORTHO05D000423 2.1e-10 69.3 88 47.7
BcaNung05256 Brassica carinata HOM05D000038 ORTHO05D000423 2.1e-10 69.3 88 47.7
ECA234G0999 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.1e-10 69.3 87 46.0
Actinidia29451 Actinidia chinensis HOM05D000038 ORTHO05D000423 2.7e-10 68.9 78 51.3
MBI03_g05983_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 2.7e-10 68.9 85 47.1
CiPaw.05G225000 Carya illinoinensis HOM05D000038 ORTHO05D000423 3.5e-10 68.6 78 47.4
HanXRQChr17g0570881 Helianthus annuus HOM05D000038 ORTHO05D000423 6.0e-10 67.8 90 44.4
RhsimUnG0218300 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.0e-10 67.8 85 49.4
Nitab4.5_0001663g0190 Nicotiana tabacum HOM05D000038 ORTHO05D000423 7.8e-10 67.4 84 39.3
Prupe.1G502100 Prunus persica HOM05D000038 ORTHO05D000423 7.8e-10 67.4 82 50.0
RcHm_v2.0_Chr6g0295271 Rosa chinensis HOM05D000038 ORTHO05D000423 7.8e-10 67.4 82 50.0
ATR0684G151 Amborella trichopoda HOM05D000038 ORTHO05D000423 1.0e-09 67.0 82 46.3
Nitab4.5_0000733g0180 Nicotiana tabacum HOM05D000038 ORTHO05D000423 1.0e-09 67.0 85 42.4
Cfa002231 Carpinus fangiana HOM05D000038 ORTHO05D000423 2.3e-09 65.9 85 45.9
Migut.L00576 Erythranthe guttata HOM05D000038 ORTHO05D000423 2.3e-09 65.9 82 40.2
SGA_v2.0_scaffold3G01802 Striga asiatica HOM05D000038 ORTHO05D000423 2.3e-09 65.9 82 43.9
CANSAT54G2614 Cannabis sativa HOM05D000038 ORTHO05D000423 3.9e-09 65.1 104 44.2
RhsimUnG0218200 Rhododendron simsii HOM05D000038 ORTHO05D000423 3.9e-09 65.1 85 47.1
FAN18G2474 Fragaria x ananassa HOM05D000038 ORTHO05D000423 5.1e-09 64.7 42 76.2
Zm00001eb256030 Zea mays HOM05D000038 ORTHO05D000423 5.1e-09 64.7 82 43.9
Aqoxy6G01331 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 8.7e-09 63.9 94 39.4
Migut.L00280 Erythranthe guttata HOM05D000038 ORTHO05D000423 8.7e-09 63.9 82 39.0
Lsat_1_v5_gn_4_10681 Lactuca sativa HOM05D000038 ORTHO05D000423 1.1e-08 63.5 93 39.8
Duzib168G0593 Durio zibethinus HOM05D000038 ORTHO05D000423 1.5e-08 63.2 80 48.8
HPP92_013177 Vanilla planifolia HOM05D000038 ORTHO05D000423 1.9e-08 62.8 82 42.7
Os02g0767400 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 2.5e-08 62.4 86 44.2
FvH4_5g31680 Fragaria vesca HOM05D000038 ORTHO05D000423 3.3e-08 62.0 54 59.3
HPP92_026346 Vanilla planifolia HOM05D000038 ORTHO05D000423 4.3e-08 61.6 82 46.3
SGA_v2.0_scaffold25G11104 Striga asiatica HOM05D000038 ORTHO05D000423 9.6e-08 60.5 82 45.1
Os12g0640700 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 2.1e-07 59.3 84 40.5
COL.COLO4_07273 Corchorus olitorius HOM05D000038 ORTHO05D000423 2.8e-07 58.9 54 55.6
Sed0015092 Sechium edule HOM05D000038 ORTHO05D000423 4.8e-07 58.2 82 43.9
Sabra19G0013100 Salix brachista HOM05D000038 ORTHO05D000423 8.1e-07 57.4 47 66.0
Dinv27345 Davidia involucrata HOM05D000038 ORTHO05D000423 1.1e-06 57.0 38 71.1
SGA_v2.0_scaffold54G19601 Striga asiatica HOM05D000038 ORTHO05D000423 1.1e-06 57.0 82 40.2
Sabra19G0006400 Salix brachista HOM05D000038 ORTHO05D000423 1.8e-06 56.2 56 55.4
SalBow6G5627 Salvia bowleyana HOM05D000038 ORTHO05D000423 2.4e-06 55.8 48 52.1
Dinv01182 Davidia involucrata HOM05D000038 ORTHO05D000423 9.0e-06 53.9 42 64.3


User provided reference genes

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