Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 2447.5 1274 100.0
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 2296.5 1274 92.5
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2280.0 1304 90.3
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2275.4 1274 91.8
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2261.9 1274 91.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2168.3 1252 88.3
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 2144.8 1276 86.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2124.0 1252 86.4
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1926.0 1253 78.7
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1925.2 1255 78.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1904.4 1254 78.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1876.7 1251 76.5
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1875.1 1253 75.9
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1871.7 1259 75.5
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1869.0 1259 75.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1867.4 1259 75.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1848.6 1255 75.1
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1843.9 1254 76.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1842.0 1254 75.1
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1832.4 1258 74.3
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1832.0 1252 74.6
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1830.8 1252 73.7
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1827.8 1258 73.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1820.1 1258 73.4
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1817.0 1257 74.0
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1815.8 1258 73.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1815.0 1252 74.7
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1807.3 1261 73.5
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1805.4 1259 73.4
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1803.9 1321 71.5
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1803.1 1260 73.3
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1801.2 1258 72.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1801.2 1258 73.1
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1797.7 1252 74.2
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1795.8 1256 73.5
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1794.6 1257 73.2
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1787.3 1256 73.3
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1779.6 1329 69.8
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1777.7 1254 72.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1776.1 1254 72.6
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1774.2 1258 71.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1774.2 1252 72.7
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1769.2 1255 71.4
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1761.9 1294 71.3
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1754.6 1260 72.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1748.8 1251 72.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1748.4 1251 71.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1741.9 1313 69.2
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1739.2 1254 70.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1736.1 1254 70.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1736.1 1254 70.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1734.5 1256 71.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1733.8 1260 70.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1726.5 1302 69.4
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1725.3 1256 71.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1724.9 1254 71.7
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1261 70.7
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1723.4 1254 71.5
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1718.7 1253 70.6
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1716.0 1186 75.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1714.9 1254 71.1
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1712.2 1259 70.1
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1255 70.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1257 70.2
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1701.4 1250 69.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1256 69.6
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1694.5 1308 67.7
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1694.1 1251 69.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1693.3 1252 69.0
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1689.5 1227 71.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1677.9 1252 69.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1674.8 1253 69.4
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1672.9 1257 70.2
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1249 69.1
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1256 68.8
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1181 72.0
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1181 73.2
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1251 67.8
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1634.0 1251 67.8
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1634.0 1246 68.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1632.5 1246 67.8
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1630.5 1254 67.0
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1251 66.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1296 65.0
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1585.5 1208 68.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1189 68.3
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1009 78.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1566.2 1023 77.3
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1565.8 1266 65.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1538.5 1167 67.9
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1252 61.6
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1484.5 1254 63.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1446.8 1251 60.4
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1446.8 1277 60.1
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1438.7 1256 60.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1328.9 1040 67.5
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1223.8 1254 54.9
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1219.1 889 70.8
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1181.4 966 63.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1161.4 888 68.8
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1159.4 1267 50.2
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1143.3 940 65.2
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1122.5 1257 48.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 0.0e+00 1080.1 657 82.6
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.3e-309 1065.4 794 68.6
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 4.7e-292 1008.4 815 64.9
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 5.2e-291 1005.0 1221 46.6
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.1e-270 935.3 1225 45.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.7e-223 780.0 536 74.6
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.5e-221 774.2 1282 37.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.7e-193 681.0 618 59.2
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 3.3e-192 676.8 600 60.0
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.5e-184 650.6 465 72.0
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 5.6e-184 649.4 1403 34.4
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 4.7e-175 619.8 495 66.5
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 5.8e-173 612.8 1311 32.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 3.2e-155 553.9 656 49.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.8e-134 485.0 1157 31.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.5e-132 476.5 339 70.2
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 7.2e-131 473.0 276 85.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.4e-128 463.0 703 43.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.8e-105 386.3 230 85.2
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.8e-96 356.3 272 66.2
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.8e-96 356.3 272 66.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.0e-93 348.6 231 78.8
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.5e-93 347.8 341 55.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 9.5e-91 339.7 200 87.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.0e-72 278.9 237 61.2
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.1e-57 229.9 204 61.8
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 6.4e-55 220.7 176 68.2
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.6e-51 206.8 161 68.9
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.9e-49 200.7 160 64.4
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.1e-44 184.5 104 81.7
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.1e-36 157.9 111 72.1
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 9.6e-35 153.7 1210 22.9
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 5.3e-33 147.9 92 79.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.5e-32 146.4 121 67.8
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 6.1e-29 134.4 225 43.1
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 5.1e-20 104.8 156 41.7
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 5.1e-20 104.8 95 55.8
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-19 103.2 130 40.8
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 2.2e-18 99.4 118 45.8
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.1e-17 97.1 160 40.6
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-17 97.1 118 44.1
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 5.3e-17 94.7 62 77.4
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.1e-14 87.0 121 43.8
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.1e-13 82.8 117 44.4
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 4.7e-13 81.6 78 56.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 7.9e-13 80.9 106 41.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 6.7e-12 77.8 66 57.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.0e-11 76.3 49 75.5
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.8e-09 69.7 265 26.4
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 2.9e-07 62.4 41 75.6
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 5.0e-07 61.6 47 61.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 6.5e-07 61.2 31 80.6
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 1.5e-06 60.1 57 54.4


User provided reference genes

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