Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 2.2e-28 128.3 65 100.0
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.5e-24 114.8 64 90.6
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 8.1e-23 109.8 64 85.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.1e-23 109.8 64 85.9
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.1e-23 109.8 64 85.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.1e-23 109.8 64 85.9
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 1.1e-22 109.4 64 81.2
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.4e-22 109.0 64 85.9
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.8e-22 108.6 64 81.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.4e-22 108.2 64 85.9
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.4e-22 108.2 64 85.9
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.1e-22 107.8 64 84.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 3.1e-22 107.8 64 84.4
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 4.0e-22 107.5 64 81.2
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.0e-22 107.5 64 84.4
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 4.0e-22 107.5 64 81.2
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 5.3e-22 107.1 64 82.8
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 5.3e-22 107.1 64 82.8
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 5.3e-22 107.1 64 82.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.3e-22 107.1 64 82.8
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 6.9e-22 106.7 64 81.2
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 6.9e-22 106.7 64 84.4
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 6.9e-22 106.7 64 78.1
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 6.9e-22 106.7 64 81.2
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 82.8
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.2e-21 105.9 64 79.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 79.7
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 79.7
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 79.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 79.7
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 81.2
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.5e-21 105.5 64 81.2
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 79.7
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 82.8
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 82.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 82.8
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 82.8
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.0e-21 105.1 64 81.2
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 81.2
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 79.7
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.6e-21 104.8 64 82.8
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 78.1
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 81.2
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 79.7
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 79.7
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 81.2
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 79.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 79.7
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 3.4e-21 104.4 64 81.2
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.5e-21 104.0 64 78.1
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 81.2
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 78.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 78.1
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 81.2
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 76.6
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 78.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.8e-21 103.6 64 79.7
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 7.6e-21 103.2 64 81.2
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.0e-20 102.8 65 81.5
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.0e-20 102.8 64 76.6
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.0e-20 102.8 64 76.6
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.0e-20 102.8 64 76.6
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.0e-20 102.8 64 78.1
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.7e-20 102.1 64 75.0
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.7e-20 102.1 64 76.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.7e-20 102.1 64 76.6
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.7e-20 102.1 64 78.1
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.2e-20 101.7 64 76.6
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.2e-20 101.7 64 78.1
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.2e-20 101.7 64 78.1
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.9e-20 101.3 64 76.6
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 76.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 76.6
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 76.6
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 76.6
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 73.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.8e-20 100.9 64 75.0
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.9e-20 100.5 62 79.0
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.9e-20 100.5 64 75.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 4.9e-20 100.5 64 75.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.9e-20 100.5 64 76.6
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.9e-20 100.5 64 76.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 6.5e-20 100.1 64 76.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 6.5e-20 100.1 64 76.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 6.5e-20 100.1 64 76.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-19 99.4 62 77.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.4e-19 99.0 64 73.4
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.9e-19 98.6 61 78.7
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 2.5e-19 98.2 64 73.4
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.5e-19 98.2 55 90.9
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.2e-19 97.8 64 71.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 3.2e-19 97.8 64 71.9
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 9.3e-19 96.3 64 71.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.2e-18 95.9 64 70.3
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 4.6e-18 94.0 64 71.9
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 4.6e-18 94.0 64 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 3.9e-17 90.9 64 68.8
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 6.7e-17 90.1 64 67.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 3.3e-16 87.8 64 67.2
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.7e-16 87.0 80 58.8
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 6.9e-14 80.1 64 59.4
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 9.3e-11 69.7 46 80.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.3e-09 65.1 44 77.3
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 5.7e-08 60.5 47 68.1
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 9.7e-08 59.7 63 52.4
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 9.7e-08 59.7 64 46.9


User provided reference genes

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