Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341171 Rosa chinensis HOM05D000832 ORTHO05D020986 1.0e-41 172.9 87 100.0
RcHm_v2.0_Chr5g0016171 Rosa chinensis HOM05D000832 ORTHO05D020986 1.0e-41 172.9 87 100.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.4e-22 109.4 73 80.8
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 3.3e-19 98.2 73 69.9
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 5.6e-19 97.4 70 72.9
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 1.6e-18 95.9 73 67.1
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 2.8e-18 95.1 73 67.1
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 2.8e-18 95.1 73 67.1
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.8e-18 95.1 73 67.1
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 3.6e-18 94.7 73 67.1
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.6e-18 94.7 73 67.1
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.6e-18 94.7 73 67.1
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 4.7e-18 94.4 73 68.5
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 4.7e-18 94.4 73 67.1
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 4.7e-18 94.4 73 68.5
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.7e-18 94.4 73 67.1
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 6.2e-18 94.0 73 67.1
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 6.2e-18 94.0 73 64.4
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 6.2e-18 94.0 70 68.6
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 8.1e-18 93.6 73 67.1
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 8.1e-18 93.6 73 69.9
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 1.1e-17 93.2 73 65.8
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.1e-17 93.2 72 66.7
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.4e-17 92.8 73 65.8
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 1.4e-17 92.8 73 65.8
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 1.4e-17 92.8 73 67.1
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 67.1
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 64.4
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 64.4
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 1.8e-17 92.4 72 65.3
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 1.8e-17 92.4 72 65.3
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 65.8
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 64.4
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 1.8e-17 92.4 73 64.4
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 67.1
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 65.8
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 65.8
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 65.8
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 64.4
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.4e-17 92.0 72 65.3
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 2.4e-17 92.0 73 67.1
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 3.1e-17 91.7 73 64.4
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 3.1e-17 91.7 73 65.8
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 3.1e-17 91.7 73 64.4
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 4.0e-17 91.3 73 64.4
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 4.0e-17 91.3 73 63.0
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 65.8
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 63.0
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 5.2e-17 90.9 72 65.3
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 5.2e-17 90.9 72 62.5
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 5.2e-17 90.9 73 63.0
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 6.8e-17 90.5 73 64.4
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 6.8e-17 90.5 72 63.9
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 8.9e-17 90.1 73 63.0
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 8.9e-17 90.1 72 63.9
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 8.9e-17 90.1 73 65.8
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 63.0
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 63.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.2e-16 89.7 72 63.9
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 63.0
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 1.2e-16 89.7 91 54.9
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 64.4
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 63.0
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 65.8
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.2e-16 89.7 73 64.4
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.5e-16 89.4 72 62.5
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 1.5e-16 89.4 73 64.4
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 1.5e-16 89.4 72 61.1
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 2.0e-16 89.0 72 63.9
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.0e-16 89.0 73 63.0
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 2.6e-16 88.6 72 62.5
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 2.6e-16 88.6 72 62.5
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 3.4e-16 88.2 73 63.0
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 3.4e-16 88.2 72 62.5
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 3.4e-16 88.2 73 61.6
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.4e-16 88.2 73 63.0
VMungo0464G0422 Vigna mungo HOM05D000832 ORTHO05D020986 3.4e-16 88.2 73 63.0
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 3.4e-16 88.2 73 63.0
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 4.4e-16 87.8 72 62.5
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.4e-16 87.8 73 64.4
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 4.4e-16 87.8 73 61.6
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 5.8e-16 87.4 73 63.0
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 5.8e-16 87.4 73 63.0
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 7.6e-16 87.0 73 60.3
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 7.6e-16 87.0 73 63.0
RcHm_v2.0_Chr1g0333411 Rosa chinensis HOM05D036992 ORTHO05D020986 7.6e-16 87.0 56 85.7
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 7.6e-16 87.0 73 60.3
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 7.6e-16 87.0 73 60.3
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 1.3e-15 86.3 72 62.5
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.3e-15 86.3 73 61.6
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.7e-15 85.9 71 63.4
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.7e-15 85.9 73 60.3
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 2.2e-15 85.5 73 63.0
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 2.2e-15 85.5 73 60.3
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 2.9e-15 85.1 73 63.0
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 2.9e-15 85.1 73 58.9
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 3.8e-15 84.7 73 60.3
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 4.9e-15 84.3 73 63.0
Psat0s1185g0040 Pisum sativum HOM05D000832 ORTHO05D000982 4.9e-15 84.3 72 61.1
Psat6g187920 Pisum sativum HOM05D000832 ORTHO05D000982 4.9e-15 84.3 72 61.1
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 6.4e-15 84.0 73 58.9
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 6.4e-15 84.0 70 62.9
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 6.4e-15 84.0 73 61.6
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 6.4e-15 84.0 73 61.6
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 6.4e-15 84.0 73 61.6
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 6.4e-15 84.0 73 61.6
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 1.1e-14 83.2 73 58.9
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 1.1e-14 83.2 74 59.5
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 60.3
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 60.3
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 60.3
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 60.3
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 61.6
unitig_27.g25234 Utricularia gibba HOM05D000832 ORTHO05D000982 1.4e-14 82.8 73 58.9
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 1.9e-14 82.4 73 58.9
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 3.2e-14 81.6 73 61.6
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 4.2e-14 81.3 73 58.9
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 4.2e-14 81.3 73 58.9
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 4.2e-14 81.3 73 58.9
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 4.2e-14 81.3 73 58.9
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 9.2e-14 80.1 73 60.3
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 3.5e-13 78.2 72 54.2
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 3.5e-13 78.2 72 54.2
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 4.6e-13 77.8 73 57.5
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 1.0e-12 76.6 73 56.2
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.0e-12 76.6 73 56.2
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 1.7e-12 75.9 73 56.2
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 2.3e-12 75.5 73 54.8
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 2.3e-12 75.5 73 54.8
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 2.3e-12 75.5 73 54.8
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 3.0e-12 75.1 73 54.8
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 5.1e-12 74.3 73 54.8
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 6.6e-12 73.9 73 54.8
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 6.6e-12 73.9 73 50.7
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 8.7e-12 73.6 70 50.0
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 8.7e-12 73.6 71 53.5
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 5.6e-11 70.9 75 53.3
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 9.6e-11 70.1 73 50.7
RcHm_v2.0_Chr4g0426971 Rosa chinensis HOM05D036992 ORTHO05D020986 2.8e-10 68.6 43 83.7
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 2.4e-09 65.5 73 49.3
Glyma.02G118116 Glycine max HOM05D000832 ORTHO05D015138 1.3e-07 59.7 52 61.5
Glyma.02G118148 Glycine max HOM05D000832 ORTHO05D015138 1.3e-07 59.7 52 61.5
Glyma.02G118196 Glycine max HOM05D000832 ORTHO05D015138 1.3e-07 59.7 52 61.5
Glyma.02G130816 Glycine max HOM05D000832 ORTHO05D015138 1.3e-07 59.7 52 61.5
Glyma.02G130848 Glycine max HOM05D000832 ORTHO05D015138 1.3e-07 59.7 52 61.5
SEGI_08225 Sequoiadendron giganteum HOM05D000832 ORTHO05D015138 1.3e-07 59.7 72 47.2
Glyma.02G118244 Glycine max HOM05D000832 ORTHO05D015138 3.8e-07 58.2 52 59.6
RcHm_v2.0_Chr1g0355601 Rosa chinensis HOM05D050621 ORTHO05D020986 3.8e-07 58.2 32 81.2
RcHm_v2.0_Chr2g0155311 Rosa chinensis HOM05D050621 ORTHO05D020986 3.8e-07 58.2 32 81.2
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 1.1e-06 56.6 35 82.9
CBR_g51453 Chara braunii HOM05D000832 ORTHO05D000982 4.2e-06 54.7 73 49.3


User provided reference genes

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