Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341051 Rosa chinensis HOM05D008485 ORTHO05D009647 7.6e-116 420.6 230 100.0
RcHm_v2.0_Chr5g0070861 Rosa chinensis HOM05D008485 ORTHO05D009647 2.8e-110 402.1 229 96.1
RcHm_v2.0_Chr5g0036581 Rosa chinensis HOM05D008485 ORTHO05D009647 2.2e-86 322.8 234 77.8
RcHm_v2.0_Chr5g0029021 Rosa chinensis HOM05D008485 ORTHO05D009647 1.6e-76 290.0 241 62.7
RcHm_v2.0_Chr5g0041581 Rosa chinensis HOM05D008485 ORTHO05D009647 4.1e-69 265.4 149 83.2
RcHm_v2.0_Chr7g0206051 Rosa chinensis HOM05D008485 ORTHO05D009647 1.9e-45 186.8 101 88.1
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.7e-36 156.4 142 56.3
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.7e-36 156.4 142 55.6
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.7e-36 156.4 142 55.6
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.7e-36 156.4 142 56.3
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 1.5e-31 140.6 122 56.6
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 4.4e-31 139.0 122 55.7
RcHm_v2.0_Chr7g0208561 Rosa chinensis HOM05D008485 ORTHO05D009647 1.7e-27 127.1 160 41.9
RcHm_v2.0_Chr5g0025151 Rosa chinensis HOM05D008485 ORTHO05D009647 3.9e-27 125.9 160 41.2
FAN10G1422 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.3e-19 100.1 80 56.2
FAN13G0756 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.3e-17 94.4 77 55.8
FAN10G2059 Fragaria x ananassa HOM05D008485 ORTHO05D009647 7.6e-15 85.1 64 56.2
FAN16G1636 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.2e-14 83.6 82 57.3
RcHm_v2.0_Chr2g0094421 Rosa chinensis HOM05D008485 ORTHO05D009647 8.4e-14 81.6 44 79.5
MD09G1277700 Malus domestica HOM05D008485 ORTHO05D009647 3.5e-12 76.3 76 43.4
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 2.5e-10 70.1 129 29.5
RcHm_v2.0_Chr5g0076701 Rosa chinensis HOM05D008485 ORTHO05D009647 2.1e-09 67.0 98 36.7
MBI05_g43492_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-08 64.3 137 29.2
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.0e-08 62.8 142 26.1
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 4.0e-08 62.8 159 24.5
RcHm_v2.0_Chr6g0272081 Rosa chinensis HOM05D008485 ORTHO05D009647 4.0e-08 62.8 98 34.7
MELO3C031804.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.3e-08 62.4 126 28.6
RcHm_v2.0_Chr3g0477491 Rosa chinensis HOM05D009879 ORTHO05D009647 6.9e-08 62.0 142 26.1
FAN21G3049 Fragaria x ananassa HOM05D002052 ORTHO05D000222 9.0e-08 61.6 178 23.0
MBI18_g17722_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-07 61.2 155 26.5
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-07 60.8 155 27.1
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.0e-07 60.5 120 27.5
FAN19G2296 Fragaria x ananassa HOM05D002052 ORTHO05D014224 2.6e-07 60.1 194 22.7
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 2.6e-07 60.1 88 35.2
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 7.6e-07 58.5 111 30.6
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 7.6e-07 58.5 111 30.6
MELO3C032752.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.3e-06 57.8 87 32.2
FAN15G2881 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.7e-06 57.4 109 28.4
FAN17G2189 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.7e-06 57.4 181 23.2
MBI12_g38023_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-06 57.4 161 24.2
FAN02G3550 Fragaria x ananassa HOM05D000514 ORTHO05D000222 2.2e-06 57.0 156 23.7
FAN20G0139 Fragaria x ananassa HOM05D000514 ORTHO05D000222 2.2e-06 57.0 161 20.5
MBI18_g19501_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.2e-06 57.0 116 29.3
FAN02G0861 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.9e-06 56.6 140 23.6
FAN05G1518 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.9e-06 56.6 140 23.6
FAN05G2574 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.9e-06 56.6 140 23.6
FAN09G4401 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.9e-06 56.6 140 23.6
FAN25G0653 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.9e-06 56.6 140 23.6
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 3.8e-06 56.2 109 29.4
FAN04G1484 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.9e-06 55.8 140 23.6
FAN15G1885 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.9e-06 55.8 140 23.6
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 6.4e-06 55.5 111 31.5
FAN07G0340 Fragaria x ananassa HOM05D000514 ORTHO05D000222 6.4e-06 55.5 161 20.5
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.4e-06 55.5 103 30.1
FAN21G0018 Fragaria x ananassa HOM05D002052 ORTHO05D000222 8.4e-06 55.1 140 23.6


User provided reference genes

Program Settings