Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 4.8e-142 508.1 301 100.0
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-105 386.7 309 74.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 8.8e-104 380.9 310 78.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-100 370.5 311 75.6
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-100 370.2 311 75.6
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 6.5e-91 338.2 309 72.2
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.7e-89 332.8 305 67.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.2e-87 327.4 321 63.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 5.7e-87 325.1 295 65.4
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 9.7e-87 324.3 304 62.2
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.8e-86 322.8 314 63.4
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.1e-85 320.9 300 65.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.2e-84 317.4 309 66.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.5e-84 315.8 294 65.3
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 4.5e-84 315.5 318 61.9
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 2.2e-83 313.2 318 64.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.2e-83 313.2 301 64.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-82 310.5 300 60.3
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-82 309.7 301 63.5
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.7e-81 306.2 313 59.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.7e-81 306.2 314 62.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.6e-81 305.8 307 66.8
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.8e-80 303.5 304 61.8
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.0e-80 302.8 298 61.4
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 8.8e-80 301.2 310 61.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 7.5e-79 298.1 309 63.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 7.5e-79 298.1 317 63.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.7e-78 297.0 306 63.7
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-77 294.3 322 58.7
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.0e-77 291.6 308 58.1
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 9.1e-77 291.2 301 62.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.7e-76 289.7 299 58.9
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.0e-75 287.7 298 64.4
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.0e-75 287.7 307 59.9
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.3e-75 286.6 301 59.5
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.9e-75 286.2 313 57.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 6.6e-75 285.0 302 63.9
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 4.2e-74 282.3 302 63.6
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.2e-74 282.3 304 59.5
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 7.2e-74 281.6 296 59.5
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 9.5e-74 281.2 304 59.5
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.8e-73 279.6 300 62.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.6e-73 279.3 313 60.1
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.6e-73 279.3 303 57.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.6e-73 279.3 299 60.5
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.0e-72 277.7 307 57.3
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.0e-72 277.7 306 59.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.0e-72 277.7 301 64.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.4e-72 277.3 299 60.5
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.8e-72 276.9 297 57.9
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 8.9e-72 274.6 303 59.7
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-71 274.2 304 59.2
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-71 274.2 304 59.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 7.5e-71 271.6 302 58.9
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.5e-71 271.6 312 58.3
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 7.5e-71 271.6 308 57.1
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 7.5e-71 271.6 303 61.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-70 270.8 317 59.0
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.7e-70 270.4 290 56.6
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.2e-70 270.0 302 58.9
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 4.9e-70 268.9 306 58.5
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.4e-69 266.5 307 56.7
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.4e-69 266.5 307 56.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 4.1e-69 265.8 324 54.3
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.1e-69 265.8 296 59.8
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.7e-68 263.1 345 55.1
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 7.8e-68 261.5 314 58.3
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.7e-67 260.4 305 57.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.7e-67 260.4 311 56.3
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.7e-67 260.4 298 60.7
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.3e-67 260.0 303 53.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 3.8e-67 259.2 295 57.3
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.6e-67 258.5 308 57.8
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-66 257.3 286 60.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 3.3e-66 256.1 303 55.4
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.2e-65 254.2 294 56.8
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.7e-65 252.3 309 57.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.7e-65 252.3 306 56.5
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.1e-65 251.9 301 53.5
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 4.0e-64 249.2 315 57.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 5.2e-64 248.8 303 52.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 5.2e-64 248.8 414 45.2
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.8e-64 248.4 298 59.4
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.2e-63 247.7 315 57.1
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.0e-63 246.9 312 58.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.0e-63 246.9 304 52.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.4e-63 246.1 320 51.6
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.4e-63 246.1 300 56.3
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.7e-62 243.8 300 60.0
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 6.4e-62 241.9 300 58.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 6.4e-62 241.9 300 58.7
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.1e-61 241.1 311 54.7
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.4e-61 240.7 307 58.3
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 4.1e-61 239.2 307 50.8
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 7.0e-61 238.4 310 55.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 9.2e-61 238.0 310 54.2
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.0e-60 236.9 300 56.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.0e-60 236.9 300 56.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.5e-60 236.1 314 57.0
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 4.6e-60 235.7 305 53.8
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 7.8e-60 235.0 313 52.7
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.3e-59 233.4 311 54.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.9e-59 232.6 299 57.9
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.1e-58 231.1 300 56.7
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.3e-58 229.6 299 50.8
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 5.6e-58 228.8 305 56.4
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-58 228.8 298 56.0
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 9.5e-58 228.0 313 56.2
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.5e-58 228.0 313 52.7
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.2e-57 227.6 302 59.6
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-57 227.3 270 57.0
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 6.2e-57 225.3 300 55.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 8.0e-57 224.9 299 54.5
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.0e-57 224.9 300 53.0
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 8.0e-57 224.9 306 52.9
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.3e-56 223.4 293 53.2
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.1e-56 223.0 295 56.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.0e-56 222.6 306 56.2
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.4e-55 219.2 323 50.8
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.2e-54 216.9 297 55.6
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 6.4e-54 215.3 299 48.8
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.1e-53 214.5 321 50.8
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 7.0e-53 211.8 316 48.4
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-52 210.7 317 50.8
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.7e-51 207.2 329 50.8
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.3e-51 206.8 292 54.1
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.0e-51 206.5 315 50.5
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.0e-51 206.5 309 52.4
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.0e-51 206.5 301 53.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.1e-51 205.7 315 47.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 5.1e-51 205.7 298 49.0
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.1e-50 204.5 296 55.4
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 5.6e-50 202.2 320 50.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 9.5e-50 201.4 299 50.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 9.5e-50 201.4 311 53.1
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.2e-49 201.1 229 57.6
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.8e-48 197.2 298 54.0
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 3.4e-47 193.0 304 53.0
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-46 190.7 216 57.9
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 4.9e-46 189.1 305 52.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.9e-46 189.1 222 56.3
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 7.8e-44 181.8 297 51.9
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.3e-42 176.0 214 61.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 5.6e-42 175.6 234 58.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 3.4e-39 166.4 223 53.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.9e-38 163.3 285 46.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.1e-37 158.7 303 40.9
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-35 153.7 103 72.8
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 9.6e-34 148.3 237 50.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.2e-33 147.9 218 55.5
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 9.0e-32 141.7 312 41.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.4e-31 139.8 207 53.1
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 3.4e-31 139.8 121 58.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 8.4e-30 135.2 264 43.9
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.9e-29 134.0 159 54.1
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 5.4e-29 132.5 324 41.0
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.6e-28 129.4 100 62.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.0e-27 126.7 333 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.3e-25 121.3 310 41.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.3e-25 121.3 78 83.3
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.1e-24 118.2 81 72.8
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.4e-24 117.1 81 72.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 2.4e-24 117.1 319 36.4
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 3.8e-22 109.8 75 68.0
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.2e-21 106.3 113 60.2
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.5e-20 103.2 166 49.4
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-19 101.7 335 36.1
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-18 97.1 70 70.0
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.3e-18 96.3 63 74.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.0e-16 89.7 204 41.2
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.3e-16 89.4 75 66.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.6e-15 85.5 45 95.6
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 7.6e-15 85.5 86 48.8
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.2e-14 84.0 307 38.1
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 4.9e-14 82.8 83 60.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.4e-13 81.3 208 46.2
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-12 78.2 130 46.9
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-12 77.4 118 47.5
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-09 67.8 123 46.3
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 6.2e-09 65.9 78 51.3
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 9.0e-08 62.0 102 55.9
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 5.8e-07 59.3 79 44.3
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.7e-06 57.8 296 37.8


User provided reference genes

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