Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.0e-33 145.2 73 100.0
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 3.8e-21 104.4 58 91.4
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.2e-20 100.9 58 87.9
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 9.5e-20 99.8 58 86.2
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.5e-20 99.8 58 86.2
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.5e-20 99.8 58 86.2
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.6e-19 97.8 58 86.2
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 4.9e-16 87.4 58 74.1
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 3.2e-15 84.7 58 70.7
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 4.1e-15 84.3 58 70.7
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 5.4e-15 84.0 58 70.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 5.4e-15 84.0 58 70.7
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 9.2e-15 83.2 57 71.9
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.6e-14 82.4 58 70.7
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 2.0e-14 82.0 58 67.2
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 2.0e-14 82.0 58 70.7
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 2.0e-14 82.0 58 69.0
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.7e-14 81.6 58 69.0
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.5e-14 81.3 57 68.4
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 4.6e-14 80.9 57 66.7
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.9e-14 80.5 58 67.2
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 7.8e-14 80.1 56 69.6
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 7.8e-14 80.1 58 67.2
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.8e-14 80.1 58 63.8
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.0e-13 79.7 58 67.2
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.3e-13 79.3 58 67.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.7e-13 79.0 58 67.2
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.3e-13 78.6 58 67.2
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 2.3e-13 78.6 58 65.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.3e-13 78.6 58 65.5
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.3e-13 78.6 59 64.4
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 2.3e-13 78.6 59 64.4
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 2.9e-13 78.2 59 62.7
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 5.0e-13 77.4 58 63.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.0e-13 77.4 59 62.7
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 6.6e-13 77.0 58 62.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 8.6e-13 76.6 58 63.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 8.6e-13 76.6 58 63.8
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 8.6e-13 76.6 58 62.1
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 8.6e-13 76.6 58 63.8
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.1e-12 76.3 58 63.8
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.5e-12 75.9 58 63.8
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.9e-12 75.5 58 63.8
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.9e-12 75.5 57 63.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.9e-12 75.5 58 60.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-12 75.5 57 63.2
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.9e-12 75.5 57 64.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.5e-12 75.1 58 62.1
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.5e-12 75.1 58 60.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 2.5e-12 75.1 58 60.3
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 3.3e-12 74.7 58 56.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 4.3e-12 74.3 57 64.9
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 5.6e-12 73.9 58 65.5
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 5.6e-12 73.9 58 58.6
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 5.6e-12 73.9 59 64.4
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.6e-12 73.9 58 62.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 7.3e-12 73.6 59 57.6
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 7.3e-12 73.6 57 61.4
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 7.3e-12 73.6 58 65.5
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 9.5e-12 73.2 58 58.6
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 9.5e-12 73.2 58 60.3
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.2e-11 72.8 58 60.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.2e-11 72.8 58 62.1
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.2e-11 72.8 58 58.6
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.2e-11 72.8 58 58.6
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.2e-11 72.8 58 58.6
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.6e-11 72.4 57 57.9
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.6e-11 72.4 57 57.9
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.6e-11 72.4 57 57.9
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.6e-11 72.4 58 62.1
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.6e-11 72.4 58 56.9
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.6e-11 72.4 58 56.9
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.6e-11 72.4 58 63.8
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 1.6e-11 72.4 58 55.2
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.1e-11 72.0 59 54.2
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 2.1e-11 72.0 58 56.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.1e-11 72.0 58 56.9
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 2.8e-11 71.6 58 56.9
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 3.6e-11 71.2 57 57.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.7e-11 70.9 58 58.6
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 4.7e-11 70.9 58 60.3
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 6.1e-11 70.5 58 56.9
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 6.1e-11 70.5 58 56.9
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 8.0e-11 70.1 58 60.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 8.0e-11 70.1 58 56.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 8.0e-11 70.1 58 55.2
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-10 69.7 59 54.2
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.4e-10 69.3 58 53.4
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.4e-10 69.3 58 55.2
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 2.3e-10 68.6 58 53.4
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 2.3e-10 68.6 58 53.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 3.1e-10 68.2 57 57.9
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 4.0e-10 67.8 58 55.2
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 5.2e-10 67.4 58 55.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 5.2e-10 67.4 58 51.7
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 5.2e-10 67.4 58 51.7
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 6.8e-10 67.0 58 51.7
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 1.2e-09 66.2 57 52.6
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 4.4e-09 64.3 58 51.7
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 4.4e-09 64.3 58 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.8e-09 63.9 56 53.6
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 7.5e-09 63.5 42 71.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 7.5e-09 63.5 58 55.2
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 4.9e-08 60.8 58 56.9
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 4.9e-08 60.8 58 56.9
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 8.3e-08 60.1 58 48.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.2e-06 56.2 56 44.6
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.0e-06 55.5 57 45.6
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 4.6e-06 54.3 39 69.2


User provided reference genes

Program Settings