Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340561 Rosa chinensis HOM05D014088 ORTHO05D018174 7.9e-110 401.0 290 100.0
RcHm_v2.0_Chr1g0340621 Rosa chinensis HOM05D014088 ORTHO05D013699 3.2e-42 176.4 318 54.4
RcHm_v2.0_Chr1g0340431 Rosa chinensis HOM05D014088 ORTHO05D018174 6.2e-38 162.2 278 68.0
RcHm_v2.0_Chr1g0340531 Rosa chinensis HOM05D014088 ORTHO05D013699 2.3e-29 133.7 318 40.3
RcHm_v2.0_Chr1g0340491 Rosa chinensis HOM05D014088 ORTHO05D018174 1.2e-28 131.3 332 57.5
MD07G1081300 Malus domestica HOM05D002986 ORTHO05D018174 1.2e-22 111.3 281 29.5
FAN06G3282 Fragaria x ananassa HOM05D014088 ORTHO05D018174 1.5e-20 104.4 107 54.2
RcHm_v2.0_Chr1g0340691 Rosa chinensis HOM05D002986 ORTHO05D003966 2.2e-19 100.5 162 42.6
RcHm_v2.0_Chr1g0340331 Rosa chinensis HOM05D013799 ORTHO05D013699 8.4e-19 98.6 84 65.5
RcHm_v2.0_Chr1g0340661 Rosa chinensis HOM05D002986 ORTHO05D003966 6.2e-14 82.4 171 65.5
MD02G1232100 Malus domestica HOM05D002986 ORTHO05D003966 1.4e-13 81.3 160 33.8
Manes.05G019600 Manihot esculenta HOM05D002986 ORTHO05D003966 6.9e-13 79.0 161 32.3
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 7.6e-12 75.5 163 31.3
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 9.9e-12 75.1 95 44.2
CSS0003779 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 2.9e-11 73.6 163 32.5
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 8.4e-11 72.0 40 80.0
arahy.Tifrunner.gnm1.ann1.H6TD7S Arachis hypogaea HOM05D014088 ORTHO05D018174 4.2e-10 69.7 74 44.6
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 7.1e-10 68.9 67 50.7
Atru.chr5.724 Acer truncatum HOM05D014088 ORTHO05D018174 4.6e-09 66.2 40 77.5
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 4.6e-09 66.2 81 46.9
Sabra12G0021100 Salix brachista HOM05D002986 ORTHO05D003966 4.6e-09 66.2 50 56.0
Duzib138G0512 Durio zibethinus HOM05D002986 ORTHO05D003966 3.0e-08 63.5 48 60.4
Thecc.01G337500 Theobroma cacao HOM05D002986 ORTHO05D003966 3.0e-08 63.5 48 58.3
CSS0004071 Camellia sinensis var. sinensis HOM05D000716 ORTHO05D004822 3.9e-08 63.2 92 38.0
RcHm_v2.0_Chr1g0340411 Rosa chinensis HOM05D000053 ORTHO05D000035 3.9e-08 63.2 34 88.2
Potri.012G031600 Populus trichocarpa HOM05D002986 ORTHO05D003966 8.7e-08 62.0 48 54.2
Gorai.001G152700 Gossypium raimondii HOM05D002986 ORTHO05D003966 1.1e-07 61.6 52 57.7
Gohir.A07G135800 Gossypium hirsutum HOM05D002986 ORTHO05D003966 1.5e-07 61.2 52 57.7
Gohir.D07G140800 Gossypium hirsutum HOM05D002986 ORTHO05D003966 1.9e-07 60.8 52 57.7
Cpa.g.c29128.3 Carica papaya HOM05D002986 ORTHO05D003966 3.3e-07 60.1 48 54.2
FvH4_7g08341 Fragaria vesca HOM05D002986 ORTHO05D003966 3.3e-07 60.1 58 55.2
ECA236G1421 Erigeron canadensis HOM05D002986 ORTHO05D003966 7.4e-07 58.9 35 71.4
CANSAT35G1083 Cannabis sativa HOM05D002986 ORTHO05D003966 2.1e-06 57.4 42 57.1
Psat3g140560 Pisum sativum HOM05D002986 ORTHO05D003966 2.8e-06 57.0 162 25.3
Ciclev10024306m.g Citrus clementina HOM05D002986 ORTHO05D003966 3.7e-06 56.6 149 26.2
Dinv32619 Davidia involucrata HOM05D002986 ORTHO05D007611 3.7e-06 56.6 148 31.1
Actinidia25367 Actinidia chinensis HOM05D002986 ORTHO05D003966 4.8e-06 56.2 50 56.0
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 4.8e-06 56.2 158 24.7


User provided reference genes

Program Settings