Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340511 Rosa chinensis HOM05D005695 ORTHO05D007810 4.2e-50 201.1 102 100.0
RcHm_v2.0_Chr1g0340701 Rosa chinensis HOM05D005695 ORTHO05D007810 9.7e-39 163.3 99 84.8
RcHm_v2.0_Chr1g0340401 Rosa chinensis HOM05D005695 ORTHO05D007810 6.3e-38 160.6 82 95.1
Prupe.2G106600 Prunus persica HOM05D005695 ORTHO05D007810 4.4e-31 137.9 92 75.0
FAN01G0968 Fragaria x ananassa HOM05D005695 ORTHO05D007810 7.5e-31 137.1 91 80.2
FvH4_7g08330 Fragaria vesca HOM05D005695 ORTHO05D007810 2.8e-30 135.2 92 79.3
FAN10G2937 Fragaria x ananassa HOM05D005695 ORTHO05D007810 3.7e-30 134.8 93 78.5
FAN06G4316 Fragaria x ananassa HOM05D005695 ORTHO05D007810 6.3e-30 134.0 92 78.3
MD02G1232000 Malus domestica HOM05D005695 ORTHO05D007810 2.4e-29 132.1 92 72.8
Cfa003697 Carpinus fangiana HOM05D005695 ORTHO05D007810 6.5e-27 124.0 91 69.2
CiPaw.02G047100 Carya illinoinensis HOM05D005695 ORTHO05D007810 5.5e-26 120.9 92 66.3
Haze_15789 Corylus avellana HOM05D005695 ORTHO05D007810 7.2e-26 120.6 91 67.0
Gohir.A11G224224 Gossypium hirsutum HOM05D005695 ORTHO05D007810 9.5e-26 120.2 92 65.2
Manes.09G133400 Manihot esculenta HOM05D005695 ORTHO05D007810 9.5e-26 120.2 82 68.3
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 1.2e-25 119.8 92 66.3
CSS0020065 Camellia sinensis var. sinensis HOM05D005695 ORTHO05D007810 1.6e-25 119.4 92 64.1
CSS0010643 Camellia sinensis var. sinensis HOM05D005695 ORTHO05D007810 2.1e-25 119.0 74 74.3
Duzib177G0357 Durio zibethinus HOM05D005695 ORTHO05D007810 2.1e-25 119.0 91 64.8
vmacro21118 Vaccinium macrocarpon HOM05D005695 ORTHO05D007810 3.6e-25 118.2 74 73.0
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 4.7e-25 117.9 91 64.8
Rhsim03G0068300 Rhododendron simsii HOM05D005695 ORTHO05D007810 4.7e-25 117.9 74 73.0
TWI60G1156 Tripterygium wilfordii HOM05D005695 ORTHO05D007810 4.7e-25 117.9 92 64.1
CAN.G992.23 Capsicum annuum HOM05D005695 ORTHO05D007810 6.1e-25 117.5 91 62.6
DCAR_015741 Daucus carota HOM05D005695 ORTHO05D007810 8.0e-25 117.1 74 71.6
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 8.0e-25 117.1 92 64.1
Peaxi162Scf00907g00028 Petunia axillaris HOM05D005695 ORTHO05D007810 8.0e-25 117.1 94 62.8
Potri.013G070800 Populus trichocarpa HOM05D005695 ORTHO05D007810 8.0e-25 117.1 78 67.9
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 1.4e-24 116.3 92 63.0
VMungo0331G0999 Vigna mungo HOM05D005695 ORTHO05D007810 1.4e-24 116.3 92 65.2
GSVIVG01019305001 Vitis vinifera HOM05D005695 ORTHO05D007810 1.4e-24 116.3 91 62.6
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 1.8e-24 115.9 74 71.6
Solyc01g081460.3 Solanum lycopersicum HOM05D005695 ORTHO05D007810 1.8e-24 115.9 91 62.6
PGSC0003DMG400031121 Solanum tuberosum HOM05D005695 ORTHO05D007810 1.8e-24 115.9 91 61.5
Hma1.2p1_0353F.1_g133140 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 2.3e-24 115.5 73 72.6
Lj3g0016519 Lotus japonicus HOM05D005695 ORTHO05D007810 2.3e-24 115.5 83 69.9
Glyma.03G100600 Glycine max HOM05D005695 ORTHO05D007810 3.0e-24 115.2 92 63.0
Phvul.010G040100 Phaseolus vulgaris HOM05D005695 ORTHO05D007810 3.0e-24 115.2 91 64.8
Nitab4.5_0006785g0030 Nicotiana tabacum HOM05D005695 ORTHO05D007810 4.0e-24 114.8 91 60.4
Medtr8g009680 Medicago truncatula HOM05D005695 ORTHO05D007810 5.2e-24 114.4 74 71.6
CSS0017367 Camellia sinensis var. sinensis HOM05D005695 ORTHO05D007810 6.8e-24 114.0 92 59.8
Sopen01g033020 Solanum pennellii HOM05D005695 ORTHO05D007810 6.8e-24 114.0 73 68.5
TPR.G17373 Trifolium pratense HOM05D005695 ORTHO05D007810 6.8e-24 114.0 74 73.0
Psat4g216440 Pisum sativum HOM05D005695 ORTHO05D007810 8.9e-24 113.6 74 73.0
arahy.Tifrunner.gnm1.ann1.HX5TFH Arachis hypogaea HOM05D005695 ORTHO05D007810 1.5e-23 112.8 92 60.9
Sc23g0004120 Simmondsia chinensis HOM05D005695 ORTHO05D007810 1.5e-23 112.8 82 65.9
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 2.6e-23 112.1 79 63.3
CsaV3_3G009910 Cucumis sativus L. HOM05D005695 ORTHO05D007810 2.6e-23 112.1 91 61.5
arahy.Tifrunner.gnm1.ann1.9M82AQ Arachis hypogaea HOM05D005695 ORTHO05D007810 3.4e-23 111.7 92 59.8
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 3.4e-23 111.7 91 62.6
Sabra13G0061700 Salix brachista HOM05D005695 ORTHO05D007810 3.4e-23 111.7 78 66.7
Nitab4.5_0000792g0190 Nicotiana tabacum HOM05D005695 ORTHO05D007810 5.7e-23 110.9 78 69.2
Oeu060728.1 Olea europaea HOM05D005695 ORTHO05D007810 5.7e-23 110.9 79 63.3
Sed0004515 Sechium edule HOM05D005695 ORTHO05D007810 7.5e-23 110.5 93 59.1
Cpa.g.sc73.26 Carica papaya HOM05D005695 ORTHO05D007810 9.8e-23 110.2 92 62.0
MELO3C006212.2 Cucumis melo HOM05D005695 ORTHO05D007810 9.8e-23 110.2 91 61.5
Lalb_Chr07g0194921 Lupinus albus HOM05D005695 ORTHO05D007810 9.8e-23 110.2 78 69.2
AUR62038021 Chenopodium quinoa HOM05D005695 ORTHO05D007810 1.3e-22 109.8 91 61.5
ClCG05G002480 Citrullus lanatus HOM05D005695 ORTHO05D007810 1.3e-22 109.8 91 61.5
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 1.3e-22 109.8 92 62.0
Hund17169 Selenicereus undatus HOM05D005695 ORTHO05D007810 1.7e-22 109.4 92 59.8
COL.COLO4_21416 Corchorus olitorius HOM05D005695 ORTHO05D007810 2.2e-22 109.0 95 60.0
HanXRQChr04g0117691 Helianthus annuus HOM05D005695 ORTHO05D007810 2.2e-22 109.0 73 71.2
Medtr8g009700 Medicago truncatula HOM05D005695 ORTHO05D007810 2.2e-22 109.0 74 68.9
Zm00001eb210200 Zea mays HOM05D005695 ORTHO05D007810 2.2e-22 109.0 91 58.2
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 4.9e-22 107.8 91 57.1
MSTRG.4989 Avicennia marina HOM05D005695 ORTHO05D007810 8.3e-22 107.1 78 61.5
Aqoxy3G02210 Aquilegia oxysepala HOM05D005695 ORTHO05D007810 1.1e-21 106.7 74 63.5
PGR083G0136 Punica granatum HOM05D005695 ORTHO05D007810 1.1e-21 106.7 74 64.9
SalBow4G2268 Salvia bowleyana HOM05D005695 ORTHO05D007810 1.1e-21 106.7 78 62.8
THA.LOC104820817 Tarenaya hassleriana HOM05D005695 ORTHO05D007810 1.1e-21 106.7 91 52.7
Ca_25883_v3 Cicer arietinum L. HOM05D005695 ORTHO05D007810 4.1e-21 104.8 74 73.0
Migut.N01667 Erythranthe guttata HOM05D005695 ORTHO05D007810 5.4e-21 104.4 78 56.4
SGA_v2.0_scaffold4G02228 Striga asiatica HOM05D005695 ORTHO05D007810 9.2e-21 103.6 77 61.0
CDE11G0447 Ceratophyllum demersum HOM05D005695 ORTHO05D007810 1.2e-20 103.2 75 62.7
PSO063G4708 Papaver somniferum HOM05D005695 ORTHO05D007810 2.0e-20 102.4 78 64.1
Os01g0535900 Oryza sativa ssp. japonica HOM05D005695 ORTHO05D007810 3.5e-20 101.7 82 58.5
Aa31LG11G11970 Aethionema arabicum HOM05D005695 ORTHO05D007810 5.9e-20 100.9 75 61.3
Lsat_1_v5_gn_7_33441 Lactuca sativa HOM05D005695 ORTHO05D007810 7.8e-20 100.5 73 68.5
ECA236G4408 Erigeron canadensis HOM05D005695 ORTHO05D007810 1.0e-19 100.1 91 53.8
Carub.0006s1590 Capsella rubella HOM05D005695 ORTHO05D007810 2.9e-19 98.6 92 52.2
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 6.6e-19 97.4 78 60.3
AT5G17660 Arabidopsis thaliana HOM05D005695 ORTHO05D007810 3.3e-18 95.1 92 52.2
Thhalv10014195m.g Eutrema salsugineum HOM05D005695 ORTHO05D007810 5.6e-18 94.4 91 51.6
Sp6g26560 Schrenkiella parvula HOM05D005695 ORTHO05D007810 7.3e-18 94.0 94 51.1
BcaC04g18770 Brassica carinata HOM05D005695 ORTHO05D007810 9.5e-18 93.6 92 52.2
A10p21740 Brassica napus HOM05D005695 ORTHO05D007810 9.5e-18 93.6 92 52.2
C09p59500 Brassica napus HOM05D005695 ORTHO05D007810 9.5e-18 93.6 92 52.2
BraA10t44235Z Brassica rapa HOM05D005695 ORTHO05D007810 9.5e-18 93.6 92 52.2
CSS0005281 Camellia sinensis var. sinensis HOM05D005695 ORTHO05D007810 9.5e-18 93.6 72 63.9
AL6G28750 Arabidopsis lyrata HOM05D005695 ORTHO05D007810 2.1e-17 92.4 92 50.0
CARHR195520 Cardamine hirsuta HOM05D005695 ORTHO05D007810 2.1e-17 92.4 91 50.5
BolC9t58788H Brassica oleracea HOM05D005695 ORTHO05D007810 4.7e-17 91.3 92 51.1
SEGI_31772 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 4.7e-17 91.3 92 52.2
BcaB08g36754 Brassica carinata HOM05D005695 ORTHO05D007810 1.0e-16 90.1 92 51.1
unitig_22.g5902 Utricularia gibba HOM05D005695 ORTHO05D007810 1.4e-16 89.7 92 51.1
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 3.2e-13 78.6 80 48.8
SMO351G0486 Selaginella moellendorffii HOM05D005695 ORTHO05D007810 3.9e-11 71.6 89 41.6
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 5.0e-11 71.2 65 49.2
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 1.1e-10 70.1 73 46.6
Pp3c19_7240 Physcomitrium patens HOM05D005695 ORTHO05D007810 1.5e-10 69.7 72 50.0
Atru.chr2.1636 Acer truncatum HOM05D005695 ORTHO05D007810 2.5e-10 68.9 70 48.6
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 2.5e-10 68.9 73 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 6.8e-08 60.8 72 43.1
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 7.5e-07 57.4 76 40.8


User provided reference genes

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