Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340441 Rosa chinensis HOM05D002986 ORTHO05D003966 2.6e-65 251.9 126 100.0
RcHm_v2.0_Chr1g0340691 Rosa chinensis HOM05D002986 ORTHO05D003966 1.3e-48 196.4 106 91.5
FvH4_7g08341 Fragaria vesca HOM05D002986 ORTHO05D003966 4.1e-39 164.9 110 74.5
RcHm_v2.0_Chr1g0340661 Rosa chinensis HOM05D002986 ORTHO05D003966 4.7e-35 151.4 87 85.1
MD02G1232100 Malus domestica HOM05D002986 ORTHO05D003966 1.5e-33 146.4 115 64.3
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 2.6e-33 145.6 113 67.3
CiPaw.01G079100 Carya illinoinensis HOM05D002986 ORTHO05D003966 7.1e-23 110.9 84 63.1
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 6.0e-22 107.8 110 50.9
ClCG05G013300 Citrullus lanatus HOM05D002986 ORTHO05D003966 2.3e-21 105.9 101 51.5
Dinv32619 Davidia involucrata HOM05D002986 ORTHO05D007611 3.9e-21 105.1 98 57.1
Cfa003765 Carpinus fangiana HOM05D002986 ORTHO05D003966 5.1e-21 104.8 104 51.0
Lsat_1_v5_gn_7_4680 Lactuca sativa HOM05D002986 ORTHO05D003966 5.1e-21 104.8 82 59.8
Actinidia25367 Actinidia chinensis HOM05D002986 ORTHO05D003966 8.7e-21 104.0 82 57.3
HanXRQChr04g0120401 Helianthus annuus HOM05D002986 ORTHO05D003966 8.7e-21 104.0 78 60.3
Haze_15702 Corylus avellana HOM05D002986 ORTHO05D003966 1.9e-20 102.8 104 50.0
QL08p046166 Quercus lobata HOM05D002986 ORTHO05D003966 2.5e-20 102.4 83 59.0
Oeu004987.4 Olea europaea HOM05D002986 ORTHO05D003966 4.3e-20 101.7 82 58.5
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 5.6e-20 101.3 82 57.3
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 5.6e-20 101.3 82 57.3
TAR636G3678 Trochodendron aralioides HOM05D002986 ORTHO05D007611 5.6e-20 101.3 105 50.5
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 7.3e-20 100.9 92 52.2
MBI04_g11919_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D003966 9.6e-20 100.5 118 46.6
MELO3C014863.2 Cucumis melo HOM05D002986 ORTHO05D003966 2.1e-19 99.4 96 53.1
CSS0003779 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 4.8e-19 98.2 78 59.0
CSS0037924 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 4.8e-19 98.2 69 63.8
CsaV3_3G027230 Cucumis sativus L. HOM05D002986 ORTHO05D003966 4.8e-19 98.2 96 53.1
CANSAT35G1083 Cannabis sativa HOM05D002986 ORTHO05D003966 6.2e-19 97.8 82 56.1
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 6.2e-19 97.8 73 61.6
Manes.05G019600 Manihot esculenta HOM05D002986 ORTHO05D003966 8.1e-19 97.4 90 53.3
Atru.chr5.725 Acer truncatum HOM05D002986 ORTHO05D003966 1.1e-18 97.1 93 53.8
Duzib138G0512 Durio zibethinus HOM05D002986 ORTHO05D003966 1.1e-18 97.1 93 55.9
Rhsim07G0001900 Rhododendron simsii HOM05D002986 ORTHO05D007611 1.1e-18 97.1 102 52.0
SalBow5G2864 Salvia bowleyana HOM05D001628 ORTHO05D001568 1.8e-18 96.3 100 50.0
CDE07G1865 Ceratophyllum demersum HOM05D002986 ORTHO05D003966 2.4e-18 95.9 78 59.0
Lj7C453T5 Lonicera japonica HOM05D002986 ORTHO05D003966 2.4e-18 95.9 78 57.7
Nn1g06487 Nelumbo nucifera HOM05D002986 ORTHO05D003966 2.4e-18 95.9 78 57.7
Nitab4.5_0002527g0080 Nicotiana tabacum HOM05D000716 ORTHO05D004822 2.4e-18 95.9 82 57.3
MSTRG.28276 Avicennia marina HOM05D002986 ORTHO05D003966 3.1e-18 95.5 112 49.1
Cpa.g.c29128.3 Carica papaya HOM05D002986 ORTHO05D003966 3.1e-18 95.5 91 49.5
Thecc.01G337500 Theobroma cacao HOM05D002986 ORTHO05D003966 3.1e-18 95.5 92 48.9
Sopen01g039970 Solanum pennellii HOM05D002986 ORTHO05D009442 4.0e-18 95.1 82 54.9
PGSC0003DMG400000242 Solanum tuberosum HOM05D002986 ORTHO05D009442 4.0e-18 95.1 82 54.9
TWI59G0009 Tripterygium wilfordii HOM05D002986 ORTHO05D003966 4.0e-18 95.1 96 53.1
THA.LOC104798785 Tarenaya hassleriana HOM05D002986 ORTHO05D003966 5.3e-18 94.7 81 53.1
Solyc01g096210.4 Solanum lycopersicum HOM05D002986 ORTHO05D003966 6.9e-18 94.4 82 53.7
Ciclev10024306m.g Citrus clementina HOM05D002986 ORTHO05D003966 1.2e-17 93.6 95 51.6
Gorai.001G152700 Gossypium raimondii HOM05D002986 ORTHO05D003966 1.2e-17 93.6 85 52.9
Potri.012G031600 Populus trichocarpa HOM05D002986 ORTHO05D003966 2.0e-17 92.8 71 60.6
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 3.4e-17 92.0 103 48.5
SalBow4G2308 Salvia bowleyana HOM05D002986 ORTHO05D003966 3.4e-17 92.0 79 53.2
Sc09g0006490 Simmondsia chinensis HOM05D002986 ORTHO05D003966 3.4e-17 92.0 119 44.5
Gohir.A07G135800 Gossypium hirsutum HOM05D002986 ORTHO05D003966 4.4e-17 91.7 85 51.8
PGR083G0469 Punica granatum HOM05D002986 ORTHO05D003966 9.9e-17 90.5 68 63.2
Sabra12G0021100 Salix brachista HOM05D002986 ORTHO05D003966 9.9e-17 90.5 106 46.2
Eucgr.E00027 Eucalyptus grandis HOM05D002986 ORTHO05D003966 1.7e-16 89.7 76 59.2
Sed0020837 Sechium edule HOM05D002986 ORTHO05D007611 2.2e-16 89.4 101 46.5
EL10Ac1g01397 Beta vulgaris HOM05D002986 ORTHO05D003966 4.9e-16 88.2 68 60.3
Thhalv10013226m.g Eutrema salsugineum HOM05D002986 ORTHO05D003966 6.4e-16 87.8 79 51.9
AUR62024804 Chenopodium quinoa HOM05D002986 ORTHO05D003966 8.4e-16 87.4 99 48.5
Ah.05g169180 Amaranthus hybridus HOM05D002986 ORTHO05D007611 1.1e-15 87.0 101 51.5
Cc05_g05060 Coffea canephora HOM05D002986 ORTHO05D007611 1.9e-15 86.3 74 56.8
AT5G16420 Arabidopsis thaliana HOM05D002986 ORTHO05D003966 2.4e-15 85.9 83 50.6
SGA_v2.0_scaffold43G16408 Striga asiatica HOM05D002986 ORTHO05D003966 3.2e-15 85.5 119 42.0
GSVIVG01031218001 Vitis vinifera HOM05D002986 ORTHO05D007611 7.1e-15 84.3 86 52.3
C03p08980 Brassica napus HOM05D002986 ORTHO05D003966 9.3e-15 84.0 80 47.5
Sp6g27760 Schrenkiella parvula HOM05D002986 ORTHO05D003966 1.6e-14 83.2 86 47.7
SGA_v2.0_scaffold581G53045 Striga asiatica HOM05D002986 ORTHO05D003966 1.6e-14 83.2 119 40.3
Migut.L00552 Erythranthe guttata HOM05D002986 ORTHO05D006011 2.1e-14 82.8 82 48.8
Carub.0006s1462 Capsella rubella HOM05D002986 ORTHO05D003966 2.7e-14 82.4 80 50.0
Aa31LG11G13230 Aethionema arabicum HOM05D002986 ORTHO05D003966 7.9e-14 80.9 83 49.4
BolC3t13394H Brassica oleracea HOM05D002986 ORTHO05D003966 7.9e-14 80.9 81 48.1
Migut.N01566 Erythranthe guttata HOM05D002986 ORTHO05D006011 7.9e-14 80.9 89 46.1
CARHR196830 Cardamine hirsuta HOM05D002986 ORTHO05D003966 1.0e-13 80.5 83 48.2
AL6G27360 Arabidopsis lyrata HOM05D002986 ORTHO05D003966 2.3e-13 79.3 80 48.8
A03p07760 Brassica napus HOM05D002986 ORTHO05D003966 2.3e-13 79.3 66 53.0
BraA03t10103Z Brassica rapa HOM05D002986 ORTHO05D003966 2.3e-13 79.3 66 53.0
Aqoxy3G02934 Aquilegia oxysepala HOM05D002986 ORTHO05D003966 3.9e-13 78.6 96 43.8
SHI13050 Sapria himalayana HOM05D002986 ORTHO05D003966 3.9e-13 78.6 72 51.4
ATR0929G004 Amborella trichopoda HOM05D002986 ORTHO05D003966 1.9e-12 76.3 101 41.6
Psat3g140560 Pisum sativum HOM05D002986 ORTHO05D003966 1.9e-12 76.3 81 50.6
Ca_26027_v3 Cicer arietinum L. HOM05D002986 ORTHO05D003966 2.5e-12 75.9 96 44.8
Lj1g0024766 Lotus japonicus HOM05D002986 ORTHO05D003966 4.3e-12 75.1 85 45.9
Medtr7g060720 Medicago truncatula HOM05D002986 ORTHO05D003966 4.8e-11 71.6 90 43.3
ATR0929G003 Amborella trichopoda HOM05D002986 ORTHO05D003966 6.2e-11 71.2 73 43.8
VMungo1309G1441 Vigna mungo HOM05D002986 ORTHO05D003966 2.4e-10 69.3 90 41.1
arahy.Tifrunner.gnm1.ann1.N9VQ32 Arachis hypogaea HOM05D002986 ORTHO05D003966 4.0e-10 68.6 100 40.0
Phvul.008G101200 Phaseolus vulgaris HOM05D002986 ORTHO05D003966 9.0e-10 67.4 94 39.4
arahy.Tifrunner.gnm1.ann1.T6B6L0 Arachis hypogaea HOM05D002986 ORTHO05D003966 1.2e-09 67.0 100 41.0
Atru.chr5.721 Acer truncatum HOM05D002986 ORTHO05D003966 2.6e-09 65.9 49 59.2
ECA236G0037 Erigeron canadensis HOM05D002986 ORTHO05D003966 2.6e-09 65.9 49 59.2
arahy.Tifrunner.gnm1.ann1.Z51W7G Arachis hypogaea HOM05D002986 ORTHO05D013699 5.8e-09 64.7 100 40.0
RcHm_v2.0_Chr1g0340541 Rosa chinensis HOM05D002986 ORTHO05D003966 2.9e-08 62.4 32 84.4
Glyma.07G131700 Glycine max HOM05D002986 ORTHO05D003966 1.1e-07 60.5 99 41.4
ECA236G1421 Erigeron canadensis HOM05D002986 ORTHO05D003966 2.4e-07 59.3 49 53.1


User provided reference genes

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