Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 3.5e-118 428.3 219 100.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.6e-102 376.3 218 87.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.5e-100 369.0 218 85.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.6e-99 365.2 218 84.9
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-98 362.5 218 84.4
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.8e-98 360.9 218 83.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.8e-94 347.4 230 79.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.8e-90 334.3 218 77.1
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.7e-88 329.7 218 76.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.7e-86 322.4 216 75.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 6.2e-75 284.6 218 65.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 6.9e-74 281.2 218 64.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.5e-73 280.0 218 64.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.6e-73 279.3 218 64.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 4.5e-73 278.5 218 63.3
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.9e-72 275.8 215 65.1
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.9e-72 275.0 217 63.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 6.4e-72 274.6 217 63.1
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 6.4e-72 274.6 218 61.9
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.1e-71 273.9 218 64.2
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.0e-69 267.3 217 60.8
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.3e-69 266.9 217 60.8
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.3e-69 266.2 217 60.8
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.3e-69 266.2 217 61.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.0e-69 265.8 217 61.8
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.2e-67 258.1 218 60.1
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 4.5e-65 251.9 218 58.7
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 5.8e-65 251.5 204 60.8
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 4.9e-64 248.4 204 63.7
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.9e-63 246.5 218 55.5
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.6e-62 243.4 218 56.9
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-62 243.4 215 59.5
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.7e-62 242.7 215 58.6
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 4.6e-62 241.9 215 58.6
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 4.6e-62 241.9 217 55.8
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-61 240.0 218 57.8
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.3e-61 239.6 218 58.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.0e-61 239.2 218 57.8
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 5.1e-61 238.4 218 53.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 8.7e-61 237.7 162 79.0
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 1.1e-60 237.3 204 60.3
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.5e-60 236.9 204 60.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.9e-60 236.5 218 56.4
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.3e-60 235.7 218 55.5
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.3e-60 235.3 218 56.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 5.7e-60 235.0 217 53.9
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 9.6e-60 234.2 217 52.1
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 2.1e-59 233.0 218 52.8
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 2.8e-59 232.6 204 58.8
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 8.2e-59 231.1 219 54.3
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.1e-58 230.7 215 52.1
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.1e-58 230.7 219 53.9
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.8e-58 229.9 217 52.1
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 5.3e-58 228.4 218 51.8
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.2e-57 227.3 204 53.9
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.2e-57 227.3 217 51.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 3.4e-57 225.7 218 52.3
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 3.4e-57 225.7 218 52.8
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 5.9e-57 224.9 218 52.3
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.2e-56 223.0 218 54.6
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 8.5e-56 221.1 218 50.0
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.5e-55 219.5 204 55.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.2e-55 219.2 236 48.7
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.5e-55 218.4 177 62.7
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 7.2e-55 218.0 218 50.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 7.2e-55 218.0 217 52.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.2e-54 217.2 217 51.6
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.3e-53 213.8 211 49.3
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.3e-53 213.8 211 52.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.8e-53 213.4 217 52.1
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.8e-53 213.4 217 52.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.8e-53 213.4 217 51.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 2.3e-53 213.0 217 50.7
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 5.1e-53 211.8 210 51.4
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.7e-53 211.1 218 50.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.1e-52 210.7 204 50.0
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.5e-52 210.3 217 49.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.5e-52 210.3 217 52.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.5e-52 210.3 217 52.1
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.5e-52 210.3 217 52.1
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.5e-52 210.3 217 51.2
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.3e-52 209.1 204 54.4
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.6e-51 206.8 217 49.8
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.8e-51 206.1 217 50.2
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.8e-51 206.1 226 49.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.8e-51 205.3 205 51.2
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 4.8e-51 205.3 217 49.8
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 6.3e-51 204.9 217 49.3
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.8e-50 203.4 217 47.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.1e-50 202.6 153 62.1
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 5.3e-50 201.8 205 54.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 5.3e-50 201.8 240 44.6
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.0e-49 199.9 260 43.1
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 5.9e-49 198.4 205 53.2
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 5.0e-48 195.3 220 46.8
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 6.5e-48 194.9 217 46.5
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 4.2e-47 192.2 205 47.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.6e-46 190.3 153 62.7
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 2.7e-46 189.5 215 43.7
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 6.7e-45 184.9 196 50.0
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.3e-44 182.6 165 54.5
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.1e-42 177.6 218 40.4
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.8e-42 176.8 221 46.2
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 3.1e-42 176.0 202 48.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 6.9e-42 174.9 231 44.6
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.2e-40 169.9 155 51.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.7e-38 162.9 193 43.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-36 157.5 216 41.7
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-36 156.4 142 59.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.8e-32 142.5 178 45.5
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.0e-29 134.4 204 32.8
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.4e-29 134.0 218 39.9
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.0e-29 132.9 120 50.0
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.2e-29 132.1 107 57.0
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 8.8e-29 131.3 218 39.9
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.5e-28 130.6 215 40.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 7.5e-28 128.3 217 35.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 2.4e-26 123.2 203 38.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.5e-25 119.4 90 66.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.7e-24 117.1 90 66.7
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.4e-18 96.7 195 29.2
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 7.7e-17 91.7 174 30.5
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.6e-12 76.6 67 55.2
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 3.4e-12 76.3 72 50.0
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.8e-11 73.2 96 43.8
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 5.6e-07 58.9 45 68.9


User provided reference genes

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