Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 8.9e-96 353.6 179 100.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.1e-83 311.2 177 89.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.4e-80 303.1 177 87.0
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-80 303.1 177 87.0
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.8e-80 302.8 177 86.4
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.9e-78 295.4 177 84.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.9e-78 294.7 177 84.2
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 8.4e-78 293.9 177 84.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 8.4e-78 293.9 177 82.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.4e-77 292.4 177 83.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.4e-77 292.4 177 83.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 3.2e-77 292.0 177 81.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 9.3e-77 290.4 178 81.5
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.6e-76 289.7 177 80.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.1e-76 289.3 177 81.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.7e-76 288.9 177 81.4
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.6e-76 288.1 177 80.8
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.0e-75 287.0 177 78.0
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.0e-75 287.0 177 80.2
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.7e-75 286.2 177 78.5
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 2.3e-75 285.8 177 80.8
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 3.0e-75 285.4 177 79.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.9e-75 285.0 177 78.5
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 5.1e-75 284.6 177 79.7
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 8.7e-75 283.9 177 79.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 8.7e-75 283.9 177 79.7
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.1e-74 283.5 177 79.1
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.9e-74 282.7 177 79.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.9e-74 282.7 177 79.7
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.9e-74 282.7 177 78.0
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.5e-74 282.3 176 80.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.3e-74 282.0 177 79.7
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.3e-74 282.0 177 77.4
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 4.3e-74 281.6 177 76.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 5.6e-74 281.2 177 77.4
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.3e-73 280.0 177 77.4
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.6e-73 279.6 177 76.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 3.6e-73 278.5 177 77.4
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.6e-73 278.5 177 78.5
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 6.2e-73 277.7 194 73.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-72 276.9 177 78.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.1e-72 276.9 177 76.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.4e-72 276.6 177 76.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.4e-72 275.8 177 77.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.1e-72 275.4 177 78.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.0e-72 275.0 177 78.5
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 4.0e-72 275.0 177 76.8
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 9.0e-72 273.9 177 75.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.2e-71 273.5 177 78.5
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 3.4e-71 271.9 177 75.7
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 7.6e-71 270.8 177 75.7
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 7.6e-71 270.8 177 75.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.8e-70 268.5 177 75.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 9.3e-69 263.8 176 74.4
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.2e-68 263.5 176 74.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.2e-68 263.5 177 72.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.7e-68 262.3 176 73.9
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 6.0e-68 261.2 177 71.2
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 7.9e-68 260.8 176 70.5
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 7.9e-68 260.8 177 72.3
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.0e-67 260.4 177 69.5
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.0e-67 260.4 177 71.8
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.0e-67 260.4 177 71.8
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.0e-67 260.4 176 74.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.0e-67 260.4 177 72.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.3e-67 260.0 175 72.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.3e-67 260.0 177 71.2
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.8e-67 259.6 177 71.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.3e-67 259.2 177 71.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.3e-67 259.2 176 73.9
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.3e-67 259.2 177 70.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 3.0e-67 258.8 177 71.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 3.0e-67 258.8 177 71.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 3.0e-67 258.8 176 73.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 3.9e-67 258.5 175 71.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.9e-67 258.5 177 72.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.9e-67 258.5 177 71.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 6.7e-67 257.7 177 68.9
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 6.7e-67 257.7 175 71.4
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 6.7e-67 257.7 177 74.0
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.5e-66 256.5 177 72.3
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.9e-66 256.1 177 71.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.3e-66 255.4 175 70.9
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 3.3e-66 255.4 168 75.0
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 3.3e-66 255.4 176 71.6
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 4.3e-66 255.0 177 70.1
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.6e-66 254.6 174 73.6
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 9.6e-66 253.8 177 69.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.3e-65 253.4 177 71.8
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.3e-65 253.4 177 71.2
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.3e-65 253.4 177 71.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 2.1e-65 252.7 175 70.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.8e-65 251.5 177 66.7
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.4e-64 250.0 177 68.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.4e-64 250.0 177 68.9
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.4e-64 249.2 175 72.0
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.4e-64 249.2 176 71.6
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.1e-64 248.8 169 71.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.0e-64 248.4 177 68.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 5.3e-64 248.1 176 71.0
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 5.3e-64 248.1 177 70.6
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.6e-63 245.7 169 70.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.0e-62 243.8 168 72.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.1e-61 240.4 170 68.8
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.9e-61 239.6 177 66.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 9.3e-61 237.3 177 65.5
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.9e-58 229.6 188 58.5
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-58 228.0 175 61.1
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.1e-57 226.1 177 61.6
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.4e-56 222.6 175 59.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.4e-55 218.8 177 61.0
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.2e-54 216.1 143 73.4
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.0e-54 214.9 136 77.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 3.0e-51 205.7 177 57.6
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 4.3e-50 201.8 170 60.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.2e-49 199.5 177 56.5
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.7e-46 189.9 168 56.5
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 5.0e-46 188.3 177 49.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 3.2e-45 185.7 126 72.2
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 7.2e-45 184.5 128 70.3
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.2e-33 146.4 176 40.3
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.2e-25 117.9 125 52.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.1e-24 115.5 172 33.7
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 4.7e-20 102.1 145 36.6
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.1e-20 101.7 176 30.1
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-17 92.4 67 68.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.2e-13 78.2 59 64.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.5e-10 70.5 40 77.5
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-07 60.8 65 36.9
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.0e-06 57.8 35 77.1


User provided reference genes

Program Settings