Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 3.8e-20 100.5 50 100.0
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.6e-10 68.6 33 97.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.1e-10 68.2 34 97.1
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 2.7e-10 67.8 39 79.5
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.7e-10 67.8 33 93.9
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 3.6e-10 67.4 34 94.1
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 93.9
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.6e-10 67.4 39 79.5
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.6e-10 67.4 34 85.3
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.6e-10 67.4 33 90.9
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 4.7e-10 67.0 33 90.9
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 4.7e-10 67.0 39 79.5
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 4.7e-10 67.0 33 90.9
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 4.7e-10 67.0 39 79.5
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 4.7e-10 67.0 39 79.5
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 4.7e-10 67.0 33 93.9
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 4.7e-10 67.0 33 90.9
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.7e-10 67.0 33 90.9
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 4.7e-10 67.0 39 79.5
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 87.9
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 87.9
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 87.9
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 87.9
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 6.1e-10 66.6 39 76.9
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 93.9
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 6.1e-10 66.6 39 79.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 6.1e-10 66.6 33 90.9
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 7.9e-10 66.2 39 76.9
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 90.9
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 90.9
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 84.8
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 87.9
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 7.9e-10 66.2 33 90.9
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.0e-09 65.9 33 90.9
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.0e-09 65.9 33 84.8
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.4e-09 65.5 33 84.8
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.4e-09 65.5 39 74.4
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.4e-09 65.5 33 90.9
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.4e-09 65.5 39 76.9
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 90.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 87.9
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 1.8e-09 65.1 33 84.8
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.3e-09 64.7 33 84.8
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 2.3e-09 64.7 33 84.8
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.3e-09 64.7 33 84.8
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 2.3e-09 64.7 39 71.8
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.3e-09 64.7 33 84.8
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.3e-09 64.7 33 84.8
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 87.9
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 87.9
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 87.9
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 3.0e-09 64.3 33 84.8
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.9e-09 63.9 33 87.9
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.9e-09 63.9 33 87.9
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 3.9e-09 63.9 33 84.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 3.9e-09 63.9 33 87.9
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.9e-09 63.9 32 93.8
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.9e-09 63.9 40 72.5
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.9e-09 63.9 33 84.8
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 81.8
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 90.9
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 81.8
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 81.8
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 84.8
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 81.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 5.1e-09 63.5 33 81.8
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 6.7e-09 63.2 33 78.8
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 8.8e-09 62.8 36 75.0
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 8.8e-09 62.8 33 84.8
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.1e-08 62.4 32 87.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 3.3e-08 60.8 32 81.2
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.7e-07 57.4 36 77.8
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 3.7e-07 57.4 39 64.1
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 1.1e-06 55.8 31 77.4


User provided reference genes

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