Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 1.1e-78 296.6 148 100.0
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 3.3e-64 248.4 159 81.8
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 1.9e-59 232.6 147 80.3
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.2e-59 230.7 149 79.9
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.1e-58 227.6 148 79.7
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.4e-57 226.5 148 79.7
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.0e-57 224.9 147 79.6
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.7e-57 224.2 147 78.9
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 8.2e-55 217.2 148 73.6
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 3.8e-52 208.4 154 70.1
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 7.0e-46 187.6 148 61.5
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 9.1e-46 187.2 150 61.3
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.0e-44 183.7 148 60.8
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 1.3e-44 183.3 138 64.5
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.7e-44 183.0 152 59.2
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 2.3e-44 182.6 148 63.5
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 2.9e-44 182.2 142 64.1
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 5.0e-44 181.4 148 62.2
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 2.5e-43 179.1 166 57.8
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 3.3e-43 178.7 143 62.2
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 7.2e-43 177.6 151 58.3
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 9.5e-43 177.2 148 60.1
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.2e-42 176.8 141 63.1
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.2e-42 176.8 150 60.7
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.2e-42 176.8 141 61.0
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.6e-42 176.4 141 63.1
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.6e-42 176.4 143 61.5
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.1e-42 176.0 147 59.2
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 6.1e-42 174.5 141 60.3
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 6.1e-42 174.5 148 58.8
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 6.1e-42 174.5 148 58.8
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 8.0e-42 174.1 147 57.1
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 1.0e-41 173.7 155 56.1
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 1.4e-41 173.3 143 59.4
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 1.4e-41 173.3 148 60.1
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.8e-41 172.9 148 58.1
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 3.0e-41 172.2 151 56.3
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.2e-40 170.2 148 58.1
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 1.5e-40 169.9 141 62.4
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 2.0e-40 169.5 148 59.5
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.6e-40 169.1 144 57.6
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.6e-40 169.1 144 57.6
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 2.6e-40 169.1 141 61.0
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 3.4e-40 168.7 148 56.1
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 4.4e-40 168.3 141 59.6
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 5.7e-40 167.9 144 56.9
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 7.5e-40 167.5 143 59.4
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 7.5e-40 167.5 146 58.9
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 9.8e-40 167.2 137 58.4
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 9.8e-40 167.2 149 56.4
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.3e-39 166.8 145 57.2
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 4.9e-39 164.9 137 57.7
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 6.3e-39 164.5 150 54.0
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 6.3e-39 164.5 153 54.2
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 6.3e-39 164.5 155 53.5
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 8.3e-39 164.1 136 57.4
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 8.3e-39 164.1 145 57.2
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 1.1e-38 163.7 140 59.3
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.4e-38 163.3 148 55.4
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 1.8e-38 162.9 153 54.2
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 3.1e-38 162.2 146 56.8
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 3.1e-38 162.2 143 59.4
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 4.1e-38 161.8 149 53.7
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 4.1e-38 161.8 146 56.8
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 5.4e-38 161.4 148 54.1
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 5.4e-38 161.4 148 54.1
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 7.0e-38 161.0 152 55.9
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 7.0e-38 161.0 143 57.3
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 9.2e-38 160.6 136 58.1
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 9.2e-38 160.6 136 58.1
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.2e-37 160.2 141 57.4
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 2.0e-37 159.5 137 56.2
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 5.9e-37 157.9 141 53.2
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 5.9e-37 157.9 141 56.7
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 7.8e-37 157.5 136 56.6
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.0e-36 157.1 136 55.9
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 1.3e-36 156.8 136 55.1
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 1.3e-36 156.8 146 54.8
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 2.9e-36 155.6 137 54.0
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 6.6e-36 154.5 139 56.1
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 1.5e-35 153.3 146 55.5
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 1.9e-35 152.9 153 52.9
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.9e-35 152.9 140 57.1
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 2.5e-35 152.5 136 55.1
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 3.3e-35 152.1 137 55.5
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 3.3e-35 152.1 146 54.8
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.6e-34 149.8 137 53.3
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 6.1e-34 147.9 146 52.7
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 1.0e-33 147.1 149 49.7
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 4.0e-33 145.2 141 50.4
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 2.0e-32 142.9 141 51.8
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 3.4e-32 142.1 141 48.9
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 1.4e-30 136.7 127 54.3
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 1.9e-30 136.3 142 48.6
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 2.4e-30 136.0 142 50.0
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.5e-27 126.7 118 55.9
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.2e-26 123.6 98 63.3
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 5.2e-25 118.2 130 53.1
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.2e-24 117.1 130 45.4
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 2.9e-23 112.5 173 42.2
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.6e-21 106.7 60 76.7
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.3e-20 103.6 134 41.8
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 1.7e-20 103.2 138 43.5
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 5.6e-19 98.2 112 48.2
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.7e-15 85.5 60 61.7
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 4.1e-14 82.0 78 52.6
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.7e-13 79.3 143 37.1
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 5.6e-11 71.6 125 36.8
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 5.6e-11 71.6 133 35.3
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.6e-10 70.1 101 35.6
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 8.9e-09 64.3 142 28.9
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.9e-07 58.5 30 86.7
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 1.9e-06 56.6 106 37.7


User provided reference genes

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