Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339681 Rosa chinensis HOM05D000550 ORTHO05D000400 1.8e-40 168.7 79 100.0
FAN02G1529 Fragaria x ananassa HOM05D000550 ORTHO05D000400 7.1e-21 103.6 72 75.0
RcHm_v2.0_Chr3g0473841 Rosa chinensis HOM05D000550 ORTHO05D000400 1.2e-20 102.8 71 77.5
FvH4_6g18830 Fragaria vesca HOM05D000550 ORTHO05D000400 1.3e-19 99.4 71 73.2
FAN05G5349 Fragaria x ananassa HOM05D000550 ORTHO05D000400 1.3e-19 99.4 71 73.2
FAN14G3959 Fragaria x ananassa HOM05D000550 ORTHO05D000400 1.3e-19 99.4 71 73.2
FAN05G2762 Fragaria x ananassa HOM05D000550 ORTHO05D000400 3.9e-19 97.8 71 71.8
Prupe.7G109300 Prunus persica HOM05D000550 ORTHO05D000400 8.4e-14 80.1 67 58.2
MD12G1024600 Malus domestica HOM05D000550 ORTHO05D000400 9.3e-13 76.6 79 49.4
QL07p038936 Quercus lobata HOM05D000550 ORTHO05D000400 1.0e-11 73.2 65 53.8
MELO3C009476.2 Cucumis melo HOM05D000550 ORTHO05D000400 3.9e-11 71.2 69 52.2
Sed0005041 Sechium edule HOM05D000550 ORTHO05D000400 1.9e-10 68.9 69 52.2
Haze_19618 Corylus avellana HOM05D000550 ORTHO05D000400 3.3e-10 68.2 65 53.8
CsaV3_3G037320 Cucumis sativus L. HOM05D000550 ORTHO05D000400 3.3e-10 68.2 69 50.7
Potri.006G212900 Populus trichocarpa HOM05D000550 ORTHO05D000400 5.6e-10 67.4 65 56.9
Cfa016614 Carpinus fangiana HOM05D000550 ORTHO05D000400 7.4e-10 67.0 65 52.3
ClCG10G018930 Citrullus lanatus HOM05D000550 ORTHO05D000400 7.4e-10 67.0 69 47.8
CiPaw.10G010200 Carya illinoinensis HOM05D000550 ORTHO05D000400 4.8e-09 64.3 65 49.2
Sabra06G0163900 Salix brachista HOM05D000550 ORTHO05D000400 4.8e-09 64.3 65 53.8
TAR369G0170 Trochodendron aralioides HOM05D000550 ORTHO05D000400 6.2e-09 63.9 65 50.8
Eucgr.K02031 Eucalyptus grandis HOM05D000550 ORTHO05D000400 8.1e-09 63.5 69 46.4
Nn6g34888 Nelumbo nucifera HOM05D000550 ORTHO05D000400 8.1e-09 63.5 69 46.4
Sed0023801 Sechium edule HOM05D000550 ORTHO05D000400 8.1e-09 63.5 65 49.2
Manes.09G054900 Manihot esculenta HOM05D000550 ORTHO05D000400 1.1e-08 63.2 69 49.3
Potri.016G079600 Populus trichocarpa HOM05D000550 ORTHO05D000400 1.1e-08 63.2 65 49.2
CANSAT64G2356 Cannabis sativa HOM05D000550 ORTHO05D000400 1.8e-08 62.4 69 44.9
TWI53G1793 Tripterygium wilfordii HOM05D000550 ORTHO05D000400 1.8e-08 62.4 65 49.2
Os02g0533300 Oryza sativa ssp. japonica HOM05D000550 ORTHO05D000400 4.0e-08 61.2 65 50.8
Lj5g0018613 Lotus japonicus HOM05D000550 ORTHO05D000400 1.2e-07 59.7 69 44.9
Aa31LG10G7730 Aethionema arabicum HOM05D000550 ORTHO05D000400 2.0e-07 58.9 65 43.1
CSS0016535 Camellia sinensis var. sinensis HOM05D000550 ORTHO05D000400 2.0e-07 58.9 69 43.5
Cpa.g.sc5.13 Carica papaya HOM05D000550 ORTHO05D000400 2.0e-07 58.9 70 44.3
MBI17_g08338_MAGBIO Magnolia biondii HOM05D000550 ORTHO05D000400 2.0e-07 58.9 67 44.8
FAN09G0362 Fragaria x ananassa HOM05D000550 ORTHO05D000400 2.6e-07 58.5 37 75.7
Medtr1g059960 Medicago truncatula HOM05D000550 ORTHO05D000400 3.4e-07 58.2 69 47.8
TAR633G1160 Trochodendron aralioides HOM05D000550 ORTHO05D000400 3.4e-07 58.2 65 47.7
BcaC07g39637 Brassica carinata HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 44.6
C08p28000 Brassica napus HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 44.6
BolC8t50412H Brassica oleracea HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 44.6
CiPaw.09G014700 Carya illinoinensis HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 46.2
Duzib106G1117 Durio zibethinus HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 47.7
Psat6g081400 Pisum sativum HOM05D000550 ORTHO05D000400 4.5e-07 57.8 69 47.8
Sabra16G0085500 Salix brachista HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 46.2
Sabra16G0087600 Salix brachista HOM05D000550 ORTHO05D000400 4.5e-07 57.8 65 46.2
BcaB01g00347 Brassica carinata HOM05D000550 ORTHO05D000400 5.8e-07 57.4 65 44.6
BcaB01g00348 Brassica carinata HOM05D000550 ORTHO05D000400 5.8e-07 57.4 65 44.6
A09p45810 Brassica napus HOM05D000550 ORTHO05D000400 5.8e-07 57.4 65 44.6
BraA09t40042Z Brassica rapa HOM05D000550 ORTHO05D000400 5.8e-07 57.4 65 44.6
Carub.0005s1917 Capsella rubella HOM05D000550 ORTHO05D000400 7.6e-07 57.0 65 41.5
CARHR162590 Cardamine hirsuta HOM05D000550 ORTHO05D000400 7.6e-07 57.0 65 44.6
Ca_03915_v3 Cicer arietinum L. HOM05D000550 ORTHO05D000400 7.6e-07 57.0 69 44.9
Lalb_Chr22g0359571 Lupinus albus HOM05D000550 ORTHO05D000400 7.6e-07 57.0 69 44.9
Aqoxy4G02771 Aquilegia oxysepala HOM05D000550 ORTHO05D000400 9.9e-07 56.6 69 40.6
Thecc.05G090000 Theobroma cacao HOM05D000550 ORTHO05D000400 9.9e-07 56.6 65 46.2
Actinidia07926 Actinidia chinensis HOM05D000550 ORTHO05D000400 1.7e-06 55.8 69 40.6
ATR0776G003 Amborella trichopoda HOM05D000550 ORTHO05D000400 1.7e-06 55.8 65 43.1
Medtr1g059940 Medicago truncatula HOM05D000550 ORTHO05D000400 1.7e-06 55.8 69 42.0
AL5G33480 Arabidopsis lyrata HOM05D011963 ORTHO05D014024 2.2e-06 55.5 65 44.6
Duzib128G0252 Durio zibethinus HOM05D000550 ORTHO05D000400 2.2e-06 55.5 69 44.9
CDE02G3613 Ceratophyllum demersum HOM05D000550 ORTHO05D000400 2.9e-06 55.1 68 41.2
COL.COLO4_29724 Corchorus olitorius HOM05D000550 ORTHO05D000400 2.9e-06 55.1 69 39.1
PGR142G3868 Punica granatum HOM05D000550 ORTHO05D000400 2.9e-06 55.1 70 42.9
TWI74G0047 Tripterygium wilfordii HOM05D000550 ORTHO05D000400 2.9e-06 55.1 65 43.1
TAR633G1050 Trochodendron aralioides HOM05D000550 ORTHO05D000400 2.9e-06 55.1 69 44.9
AT3G52720 Arabidopsis thaliana HOM05D000550 ORTHO05D000400 4.9e-06 54.3 65 43.1
BcaB02g07821 Brassica carinata HOM05D000550 ORTHO05D000400 4.9e-06 54.3 65 43.1
Medtr1g059900 Medicago truncatula HOM05D000550 ORTHO05D000400 4.9e-06 54.3 69 42.0
Nn2g14168 Nelumbo nucifera HOM05D000550 ORTHO05D000400 4.9e-06 54.3 69 42.0
Os04g0412500 Oryza sativa ssp. japonica HOM05D000550 ORTHO05D000400 4.9e-06 54.3 62 41.9
TAR633G2743 Trochodendron aralioides HOM05D000550 ORTHO05D000400 4.9e-06 54.3 65 47.7
MSTRG.10369 Avicennia marina HOM05D000550 ORTHO05D000400 6.4e-06 53.9 69 47.8
Thhalv10010611m.g Eutrema salsugineum HOM05D000550 ORTHO05D000400 6.4e-06 53.9 64 43.8
Migut.L01784 Erythranthe guttata HOM05D000550 ORTHO05D000400 8.4e-06 53.5 69 44.9


User provided reference genes

Program Settings