Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 2.4e-227 792.0 436 100.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 7.5e-181 637.5 438 79.2
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 5.4e-171 604.7 449 77.1
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.0e-169 600.5 483 70.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.1e-163 580.5 452 74.3
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 2.2e-156 556.2 454 71.4
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-151 540.4 444 70.7
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.5e-149 533.5 444 70.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.2e-132 476.5 380 70.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 7.9e-130 468.0 449 62.6
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 8.2e-127 458.0 450 60.4
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.4e-126 456.4 379 67.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 6.9e-126 454.9 450 60.2
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 9.0e-126 454.5 464 60.1
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 5.5e-123 445.3 415 64.1
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.2e-122 444.1 378 66.1
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 2.1e-122 443.4 411 62.8
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.4e-121 440.7 395 63.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 8.8e-121 438.0 428 62.9
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.5e-120 437.2 442 60.6
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 9.7e-120 434.5 409 62.1
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 9.7e-120 434.5 434 58.8
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.3e-119 434.1 372 65.3
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.3e-119 434.1 434 60.4
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.7e-119 433.7 412 62.1
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 2.2e-119 433.3 429 60.8
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 2.8e-119 433.0 450 59.3
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 4.8e-119 432.2 391 64.7
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.3e-119 431.8 440 59.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 6.3e-119 431.8 440 59.1
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 6.3e-119 431.8 450 61.8
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 3.1e-118 429.5 443 58.9
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.0e-117 426.8 378 64.0
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.6e-117 426.4 395 63.0
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 2.6e-117 426.4 436 58.0
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 7.7e-117 424.9 417 62.4
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.0e-116 424.5 403 63.3
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.3e-116 424.1 367 65.7
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 1.3e-116 424.1 390 62.1
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.7e-116 423.7 403 63.3
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.7e-116 423.7 390 62.1
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.9e-116 422.9 432 58.8
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.0e-116 422.2 378 64.3
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 6.5e-116 421.8 373 63.0
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.1e-115 421.0 421 60.3
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-115 420.2 399 61.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.5e-115 419.9 422 58.5
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 5.5e-115 418.7 457 57.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 9.4e-115 417.9 371 63.6
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 9.4e-115 417.9 371 62.3
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.2e-114 417.5 401 63.8
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.7e-114 416.4 373 61.9
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.6e-114 416.0 377 62.3
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 7.9e-114 414.8 418 59.3
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.0e-113 414.5 443 57.6
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.8e-113 413.7 377 65.5
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.8e-113 413.7 398 61.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.3e-113 413.3 453 57.2
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 8.8e-113 411.4 387 60.5
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.1e-112 411.0 405 61.5
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 9.7e-112 407.9 390 60.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 1.1e-110 404.4 417 59.5
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.4e-110 403.3 414 59.7
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 4.5e-109 399.1 435 53.1
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 7.7e-109 398.3 490 53.5
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.5e-107 393.3 370 61.4
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 2.7e-106 389.8 414 56.8
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 6.7e-105 385.2 412 55.1
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.3e-103 378.6 316 68.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.1e-102 377.9 411 55.0
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.1e-102 376.3 432 54.4
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.2e-100 370.2 440 50.2
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 8.5e-100 368.2 450 51.8
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 1.9e-99 367.1 413 51.8
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 1.9e-99 367.1 413 51.8
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 7.2e-99 365.2 416 53.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 9.4e-99 364.8 410 54.4
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 1.8e-97 360.5 419 53.0
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 6.3e-95 352.1 434 51.4
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.8e-94 350.5 415 52.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 7.0e-94 348.6 373 56.3
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.2e-93 347.8 361 60.4
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.0e-93 347.1 417 51.6
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.7e-92 344.0 319 64.6
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.2e-92 343.6 384 51.3
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.9e-92 343.2 347 59.7
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.9e-92 343.2 417 54.4
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.1e-91 341.3 408 50.7
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.2e-91 339.7 454 47.8
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 9.4e-91 338.2 419 51.1
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 8.0e-90 335.1 402 53.0
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 8.0e-90 335.1 388 55.4
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 3.0e-89 333.2 321 60.7
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 4.4e-88 329.3 413 51.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.3e-87 325.1 402 51.2
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 5.4e-86 322.4 392 51.8
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.2e-85 321.2 351 57.5
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 3.5e-85 319.7 412 49.3
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.9e-84 316.6 443 47.2
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 2.5e-83 313.5 639 39.1
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.2e-82 311.2 302 59.9
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.6e-82 310.8 382 48.7
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 6.1e-82 308.9 419 48.4
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.4e-81 307.8 370 51.4
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 3.0e-81 306.6 327 54.1
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 5.7e-80 302.4 319 54.5
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.3e-79 301.2 316 55.7
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.2e-78 296.6 509 41.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.2e-78 296.6 509 41.3
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.0e-77 293.9 356 49.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.3e-76 291.2 310 55.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.5e-72 277.7 412 44.4
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 9.8e-72 275.0 329 54.1
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.7e-68 264.2 496 39.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 6.6e-68 262.3 443 43.3
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 8.6e-68 261.9 214 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.5e-67 260.4 368 45.9
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.6e-66 257.7 378 47.6
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.9e-63 246.9 205 62.4
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 3.3e-59 233.4 363 47.1
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 8.9e-57 225.3 306 52.9
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 5.4e-54 216.1 259 50.2
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 5.6e-51 206.1 260 47.3
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 8.1e-50 202.2 253 52.6
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.1e-49 201.8 119 84.9
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.0e-44 185.3 365 39.5
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 3.9e-44 183.3 101 87.1
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 1.7e-39 167.9 145 64.1
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 9.6e-35 152.1 329 40.1
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 4.5e-32 143.3 371 31.8
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 3.5e-29 133.7 149 55.7
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 3.3e-27 127.1 198 48.0
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.3e-26 125.2 166 51.2
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.6e-26 124.8 173 37.6
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.6e-26 124.8 135 57.8
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.1e-26 124.4 67 89.6
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 9.0e-25 119.0 289 41.5
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.5e-24 116.7 74 82.4
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.8e-24 116.3 191 43.5
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 2.7e-21 107.5 66 84.8
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 4.6e-21 106.7 64 79.7
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 1.4e-17 95.1 47 95.7
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.0e-15 86.7 51 76.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 2.3e-12 77.8 75 50.7
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.4e-09 68.6 95 49.5
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.5e-08 65.1 140 27.1
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.5e-08 63.5 121 37.2
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 1.3e-07 62.0 67 58.2
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.2e-07 61.2 135 37.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.0e-07 60.1 52 59.6


User provided reference genes

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