Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0338021 Rosa chinensis HOM05D002525 ORTHO05D002727 1.3e-111 406.4 196 100.0
RcHm_v2.0_Chr4g0408711 Rosa chinensis HOM05D002525 ORTHO05D002727 1.0e-68 263.8 278 55.0
FAN12G2385 Fragaria x ananassa HOM05D002525 ORTHO05D002727 7.3e-67 257.7 272 54.4
FvH4_4g11600 Fragaria vesca HOM05D002525 ORTHO05D002727 2.8e-66 255.8 277 53.4
FAN12G1140 Fragaria x ananassa HOM05D002525 ORTHO05D002727 8.1e-66 254.2 281 52.7
FAN22G1390 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.1e-65 252.3 286 51.4
FAN17G1718 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.0e-65 251.9 293 50.2
RcHm_v2.0_Chr1g0335941 Rosa chinensis HOM05D002525 ORTHO05D002727 5.2e-65 251.5 249 56.2
MD04G1036900 Malus domestica HOM05D002525 ORTHO05D002727 8.4e-47 191.0 289 42.2
Thecc.04G183400 Theobroma cacao HOM05D002525 ORTHO05D002727 2.1e-45 186.4 279 40.5
CANSAT78G0936 Cannabis sativa HOM05D002525 ORTHO05D002727 8.7e-44 181.0 279 41.9
Manes.04G049700 Manihot esculenta HOM05D002525 ORTHO05D002727 3.3e-43 179.1 279 39.4
Dinv22676 Davidia involucrata HOM05D002525 ORTHO05D002727 2.1e-42 176.4 279 39.1
QL10p046294 Quercus lobata HOM05D002525 ORTHO05D002727 6.2e-42 174.9 281 39.5
Atru.chr3.1641 Acer truncatum HOM05D002525 ORTHO05D002727 1.8e-41 173.3 278 38.1
COL.COLO4_24369 Corchorus olitorius HOM05D002525 ORTHO05D002727 2.0e-40 169.9 261 37.9
Duzib151G0447 Durio zibethinus HOM05D002525 ORTHO05D002727 2.6e-40 169.5 272 38.6
arahy.Tifrunner.gnm1.ann1.8GR7XD Arachis hypogaea HOM05D002525 ORTHO05D002727 9.9e-40 167.5 250 38.4
Gohir.1Z049479 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.3e-39 167.2 289 36.0
Gorai.009G350800 Gossypium raimondii HOM05D002525 ORTHO05D002727 8.4e-39 164.5 289 35.6
Prupe.1G185800 Prunus persica HOM05D002525 ORTHO05D002727 8.4e-39 164.5 218 45.4
arahy.Tifrunner.gnm1.ann1.RBM2HP Arachis hypogaea HOM05D002525 ORTHO05D002727 1.4e-38 163.7 250 38.0
Potri.014G151700 Populus trichocarpa HOM05D002525 ORTHO05D002727 3.2e-38 162.5 276 34.8
Sabra14G0115300 Salix brachista HOM05D002525 ORTHO05D002727 4.2e-38 162.2 279 35.5
GSVIVG01013557001 Vitis vinifera HOM05D002525 ORTHO05D002727 5.4e-38 161.8 279 37.3
Carub.0005s2604 Capsella rubella HOM05D002525 ORTHO05D002727 2.7e-37 159.5 275 36.0
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 2.7e-37 159.5 281 34.9
THA.LOC104803553 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 3.5e-37 159.1 288 33.7
C08p34380 Brassica napus HOM05D002525 ORTHO05D002727 4.6e-37 158.7 277 36.8
BolC8t51037H Brassica oleracea HOM05D002525 ORTHO05D002727 4.6e-37 158.7 277 36.8
Thhalv10005960m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 6.0e-37 158.3 277 36.5
Sabra02G0175900 Salix brachista HOM05D002525 ORTHO05D002727 6.0e-37 158.3 272 36.0
BcaC07g40321 Brassica carinata HOM05D002525 ORTHO05D002727 1.0e-36 157.5 277 36.5
A09p51610 Brassica napus HOM05D002525 ORTHO05D002727 1.3e-36 157.1 277 36.5
BraA09t40600Z Brassica rapa HOM05D002525 ORTHO05D002727 1.3e-36 157.1 277 36.5
Sp5g03800 Schrenkiella parvula HOM05D002525 ORTHO05D002727 1.8e-36 156.8 277 36.5
AL5G41180 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 3.9e-36 155.6 285 35.4
AT3G59300 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 3.9e-36 155.6 285 35.4
CsaV3_4G003690 Cucumis sativus L. HOM05D002525 ORTHO05D002727 5.1e-36 155.2 276 34.4
MELO3C017686.2 Cucumis melo HOM05D002525 ORTHO05D002727 6.7e-36 154.8 281 34.2
Eucgr.H00428 Eucalyptus grandis HOM05D002525 ORTHO05D002727 6.7e-36 154.8 284 35.2
BcaC07g40463 Brassica carinata HOM05D002525 ORTHO05D002727 1.1e-35 154.1 278 35.6
Aa31LG10G13660 Aethionema arabicum HOM05D002525 ORTHO05D002727 1.5e-35 153.7 285 34.4
CSS0033500 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 4.3e-35 152.1 296 35.1
Haze_00705 Corylus avellana HOM05D002525 ORTHO05D002727 4.3e-35 152.1 338 33.4
CARHR169680 Cardamine hirsuta HOM05D002525 ORTHO05D002727 5.6e-35 151.8 286 33.9
TAR362G1149 Trochodendron aralioides HOM05D002525 ORTHO05D002727 3.7e-34 149.1 279 34.8
BraA07t30105Z Brassica rapa HOM05D002525 ORTHO05D002727 4.8e-34 148.7 277 35.7
A07p24600 Brassica napus HOM05D002525 ORTHO05D002727 6.9e-33 144.8 277 35.4
LjContig00049g0021232 Lotus japonicus HOM05D002525 ORTHO05D002727 9.0e-33 144.4 280 34.3
C06p25940 Brassica napus HOM05D002525 ORTHO05D002727 2.0e-32 143.3 279 34.8
BolC6t37765H Brassica oleracea HOM05D002525 ORTHO05D002727 2.6e-32 142.9 279 34.8
PGR142G2573 Punica granatum HOM05D002525 ORTHO05D002727 2.6e-32 142.9 277 34.3
Lalb_Chr10g0106411 Lupinus albus HOM05D002525 ORTHO05D002727 4.5e-32 142.1 278 34.5
Ciclev10021185m.g Citrus clementina HOM05D002525 ORTHO05D002727 6.4e-31 138.3 135 53.3
CiPaw.01G105000 Carya illinoinensis HOM05D002525 ORTHO05D002727 8.4e-31 137.9 273 36.6
Lalb_Chr17g0348081 Lupinus albus HOM05D002525 ORTHO05D002727 1.4e-30 137.1 268 32.8
ECA248G3080 Erigeron canadensis HOM05D002525 ORTHO05D002727 1.9e-30 136.7 278 32.4
Sopen06g029860 Solanum pennellii HOM05D002525 ORTHO05D002727 5.5e-30 135.2 279 32.3
Nitab4.5_0002368g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 7.1e-30 134.8 273 33.3
Hma1.2p1_0597F.1_g186370 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 1.2e-29 134.0 280 33.9
Medtr5g090150 Medicago truncatula HOM05D002525 ORTHO05D002727 1.2e-29 134.0 276 33.7
Actinidia35898 Actinidia chinensis HOM05D002525 ORTHO05D002727 2.1e-29 133.3 281 33.8
Solyc06g073500.3 Solanum lycopersicum HOM05D002525 ORTHO05D002727 2.7e-29 132.9 279 31.9
CAN.G65.189 Capsicum annuum HOM05D002525 ORTHO05D002727 3.5e-29 132.5 279 32.3
SalBow3G3324 Salvia bowleyana HOM05D002525 ORTHO05D002727 6.0e-29 131.7 279 33.7
Cc03_g11230 Coffea canephora HOM05D002525 ORTHO05D002727 1.8e-28 130.2 327 30.0
VMungo0647G1685 Vigna mungo HOM05D002525 ORTHO05D002727 6.7e-28 128.3 282 34.0
Peaxi162Scf00375g01017 Petunia axillaris HOM05D002525 ORTHO05D002727 8.7e-28 127.9 282 32.3
TPR.G24735 Trifolium pratense HOM05D002525 ORTHO05D002727 7.4e-27 124.8 278 32.4
Migut.G01023 Erythranthe guttata HOM05D002525 ORTHO05D002727 1.3e-26 124.0 281 32.0
PSO675G4209 Papaver somniferum HOM05D002525 ORTHO05D002727 6.2e-26 121.7 295 31.5
Phvul.008G199500 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 8.2e-26 121.3 282 32.3
Nitab4.5_0005682g0010 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.4e-25 120.6 284 30.6
Sed0019908 Sechium edule HOM05D002525 ORTHO05D002727 1.8e-25 120.2 279 29.4
Lsat_1_v5_gn_1_71460 Lactuca sativa HOM05D002525 ORTHO05D002727 3.1e-25 119.4 271 31.7
Ca_06229_v3 Cicer arietinum L. HOM05D002525 ORTHO05D002727 1.2e-24 117.5 137 46.0
Cfa015788 Carpinus fangiana HOM05D002525 ORTHO05D002727 2.6e-24 116.3 270 33.3
PSO017G7186 Papaver somniferum HOM05D002525 ORTHO05D002727 4.5e-24 115.5 296 30.7
Psat2g018040 Pisum sativum HOM05D000338 ORTHO05D002727 2.2e-23 113.2 267 31.5
Potri.002G230700 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.1e-22 110.9 219 32.4
MBI08_g18912_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 1.9e-22 110.2 304 30.6
Glyma.14G033200 Glycine max HOM05D002525 ORTHO05D002727 2.5e-22 109.8 263 31.9
ATR0743G277 Amborella trichopoda HOM05D002525 ORTHO05D002727 5.5e-22 108.6 301 29.2
vmacro00574 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 5.5e-22 108.6 150 42.7
Oeu050359.1 Olea europaea HOM05D002525 ORTHO05D002727 2.1e-21 106.7 139 41.7
Gohir.D05G326200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 4.6e-21 105.5 221 32.6
SGA_v2.0_scaffold12G06150 Striga asiatica HOM05D002525 ORTHO05D002727 1.1e-19 100.9 136 39.0
HPP92_005391 Vanilla planifolia HOM05D002525 ORTHO05D002727 4.3e-19 99.0 264 29.5
Zm00001eb144530 Zea mays HOM05D002525 ORTHO05D002727 7.4e-19 98.2 135 40.7
Os01g0899500 Oryza sativa ssp. japonica HOM05D002525 ORTHO05D002727 6.9e-17 91.7 145 35.9
CDE09G0420 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 1.7e-15 87.0 144 33.3
Rhsim09G0034900 Rhododendron simsii HOM05D002525 ORTHO05D002727 2.2e-15 86.7 155 34.8
Nn6g32107 Nelumbo nucifera HOM05D002525 ORTHO05D002727 3.9e-12 75.9 212 27.4
Lj6A63G29 Lonicera japonica HOM05D002525 ORTHO05D002727 1.5e-11 73.9 110 42.7
SEGI_30823 Sequoiadendron giganteum HOM05D002525 ORTHO05D002727 2.5e-11 73.2 187 28.9
Lj6A63T29 Lonicera japonica HOM05D002525 ORTHO05D002727 9.7e-11 71.2 68 52.9
PGSC0003DMG400027004 Solanum tuberosum HOM05D002525 ORTHO05D002727 9.7e-11 71.2 190 28.4
Duzib151G0517 Durio zibethinus HOM05D002525 ORTHO05D002727 8.2e-10 68.2 38 73.7
HanXRQChr14g0454141 Helianthus annuus HOM05D002525 ORTHO05D002727 1.4e-09 67.4 208 25.5
Cpa.g.sc71.48 Carica papaya HOM05D002525 ORTHO05D002727 1.8e-09 67.0 38 73.7
CSS0039690 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 2.4e-09 66.6 69 47.8
Lj6C63T11 Lonicera japonica HOM05D002525 ORTHO05D002727 3.1e-09 66.2 41 61.0
BolC6t37772H Brassica oleracea HOM05D002525 ORTHO05D002727 5.5e-06 55.5 56 51.8
Oeu050358.1 Olea europaea HOM05D002525 ORTHO05D002727 7.2e-06 55.1 112 38.4


User provided reference genes

Program Settings