Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0337541 Rosa chinensis HOM05D002603 ORTHO05D002907 5.0e-41 170.6 84 100.0
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 1.2e-31 139.4 71 94.4
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 1.2e-31 139.4 71 94.4
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 2.1e-31 138.7 71 91.5
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 2.1e-31 138.7 71 91.5
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 2.1e-31 138.7 71 91.5
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 2.1e-31 138.7 71 91.5
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 4.7e-31 137.5 71 90.1
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 1.2e-29 132.9 71 88.7
Prupe.7G034700 Prunus persica HOM05D002603 ORTHO05D002907 2.2e-28 128.6 70 87.1
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 2.9e-28 128.3 71 85.9
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 1.4e-27 125.9 71 84.5
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 2.4e-27 125.2 71 84.5
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 2.4e-27 125.2 71 83.1
MBI19_g14620_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 3.2e-27 124.8 71 84.5
MBI19_g45267_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 3.2e-27 124.8 71 84.5
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 4.1e-27 124.4 71 84.5
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 9.2e-27 123.2 69 84.1
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 1.6e-26 122.5 71 83.1
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 2.0e-26 122.1 71 81.7
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 2.0e-26 122.1 71 83.1
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 3.5e-26 121.3 69 82.6
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 6.0e-26 120.6 71 83.1
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 7.8e-26 120.2 71 80.3
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 7.8e-26 120.2 71 80.3
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 1.0e-25 119.8 69 81.2
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 1.0e-25 119.8 71 78.9
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 1.7e-25 119.0 71 78.9
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 1.7e-25 119.0 71 78.9
CSS0004855 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.3e-25 118.6 71 80.3
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.3e-25 118.6 71 80.3
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 3.0e-25 118.2 71 78.9
Lj1g0009963 Lotus japonicus HOM05D002603 ORTHO05D002907 3.9e-25 117.9 74 73.0
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 3.9e-25 117.9 71 77.5
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 3.9e-25 117.9 71 81.7
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 3.9e-25 117.9 71 80.3
Cpa.g.sc92.80 Carica papaya HOM05D002603 ORTHO05D002907 5.0e-25 117.5 67 82.1
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 5.0e-25 117.5 71 81.7
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 5.0e-25 117.5 71 80.3
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 5.0e-25 117.5 71 77.5
Cc00_g13160 Coffea canephora HOM05D002603 ORTHO05D002907 6.6e-25 117.1 70 78.6
TAR625G1189 Trochodendron aralioides HOM05D002603 ORTHO05D002907 6.6e-25 117.1 69 81.2
Glyma.19G129300 Glycine max HOM05D002603 ORTHO05D002907 8.6e-25 116.7 74 74.3
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 8.6e-25 116.7 71 74.6
Glyma.03G126200 Glycine max HOM05D002603 ORTHO05D002907 1.1e-24 116.3 74 74.3
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 1.1e-24 116.3 71 80.3
Cc00_g08220 Coffea canephora HOM05D002603 ORTHO05D002907 1.5e-24 115.9 70 77.1
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 1.5e-24 115.9 69 76.8
Ca_08382_v3 Cicer arietinum L. HOM05D002603 ORTHO05D002907 1.9e-24 115.5 74 73.0
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 1.9e-24 115.5 71 78.9
PSO339G5736 Papaver somniferum HOM05D002603 ORTHO05D002907 1.9e-24 115.5 71 77.5
vmacro07780 Vaccinium macrocarpon HOM05D002603 ORTHO05D002907 1.9e-24 115.5 65 83.1
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 2.5e-24 115.2 71 77.5
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 4.3e-24 114.4 71 74.6
TPR.G16084 Trifolium pratense HOM05D002603 ORTHO05D002907 4.3e-24 114.4 74 68.9
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 5.6e-24 114.0 71 78.9
PSO384G0250 Papaver somniferum HOM05D002603 ORTHO05D002907 5.6e-24 114.0 71 76.1
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 7.3e-24 113.6 71 77.5
RcHm_v2.0_Chr1g0337801 Rosa chinensis HOM05D002603 ORTHO05D002907 7.3e-24 113.6 57 91.2
Gohir.A11G306800 Gossypium hirsutum HOM05D002603 ORTHO05D002907 9.5e-24 113.2 71 76.1
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 9.5e-24 113.2 71 76.1
VMungo1383G3140 Vigna mungo HOM05D002603 ORTHO05D002907 1.2e-23 112.8 69 76.8
Phvul.001G121600 Phaseolus vulgaris HOM05D002603 ORTHO05D002907 1.6e-23 112.5 69 76.8
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 1.6e-23 112.5 54 94.4
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 2.1e-23 112.1 71 77.5
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 2.1e-23 112.1 71 76.1
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 2.1e-23 112.1 71 74.6
Psat3g079800 Pisum sativum HOM05D002603 ORTHO05D002907 2.1e-23 112.1 70 72.9
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 2.1e-23 112.1 71 76.1
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 2.8e-23 111.7 71 76.1
CDE08G1322 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.8e-23 111.7 71 73.2
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 2.8e-23 111.7 65 81.5
arahy.Tifrunner.gnm1.ann1.NB81DJ Arachis hypogaea HOM05D002603 ORTHO05D002907 3.6e-23 111.3 70 74.3
Lalb_Chr24g0400401 Lupinus albus HOM05D002603 ORTHO05D002907 4.7e-23 110.9 69 72.5
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 4.7e-23 110.9 66 77.3
ATR0307G070 Amborella trichopoda HOM05D002603 ORTHO05D002907 8.1e-23 110.2 71 74.6
arahy.Tifrunner.gnm1.ann1.K86MNX Arachis hypogaea HOM05D002603 ORTHO05D002907 8.1e-23 110.2 70 72.9
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 1.1e-22 109.8 69 73.9
Medtr7g089540 Medicago truncatula HOM05D002603 ORTHO05D002907 1.8e-22 109.0 70 70.0
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 1.8e-22 109.0 71 76.1
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 2.3e-22 108.6 71 73.2
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 2.3e-22 108.6 71 73.2
HPP92_015454 Vanilla planifolia HOM05D002603 ORTHO05D002907 2.3e-22 108.6 69 71.0
Lsat_1_v5_gn_5_156820 Lactuca sativa HOM05D002603 ORTHO05D002907 5.2e-22 107.5 71 74.6
TWI74G0363 Tripterygium wilfordii HOM05D002603 ORTHO05D002907 5.2e-22 107.5 71 76.1
EL10Ac3g07250 Beta vulgaris HOM05D002603 ORTHO05D002907 6.8e-22 107.1 71 73.2
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 6.8e-22 107.1 71 71.8
HanXRQChr01g0008101 Helianthus annuus HOM05D002603 ORTHO05D002907 6.8e-22 107.1 71 71.8
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 6.8e-22 107.1 67 76.1
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 8.9e-22 106.7 71 71.8
ECA248G3411 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.5e-21 105.9 71 73.2
SGA_v2.0_scaffold66G22361 Striga asiatica HOM05D002603 ORTHO05D002907 1.5e-21 105.9 71 71.8
Hund19086 Selenicereus undatus HOM05D002603 ORTHO05D002907 2.6e-21 105.1 71 71.8
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 5.8e-21 104.0 71 66.2
ECA233G3050 Erigeron canadensis HOM05D002603 ORTHO05D002907 2.4e-19 98.6 66 68.2
Os11g0136800 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 9.2e-19 96.7 69 66.7
Os12g0133700 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 9.2e-19 96.7 69 66.7
Nn7g36821 Nelumbo nucifera HOM05D002603 ORTHO05D002907 1.6e-18 95.9 59 74.6
ECA233G1535 Erigeron canadensis HOM05D002603 ORTHO05D002907 2.1e-18 95.5 66 68.2
Zm00001eb093380 Zea mays HOM05D002603 ORTHO05D002907 2.7e-18 95.1 69 63.8
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 3.5e-18 94.7 107 50.5
ECA233G2731 Erigeron canadensis HOM05D002603 ORTHO05D002907 5.1e-17 90.9 66 63.6
CiPaw.10G040800 Carya illinoinensis HOM05D002603 ORTHO05D002907 6.6e-17 90.5 63 71.4
Prupe.7G035100 Prunus persica HOM05D002603 ORTHO05D002907 6.6e-17 90.5 80 60.0
ECA234G4417 Erigeron canadensis HOM05D002603 ORTHO05D002907 8.6e-17 90.1 69 62.3
Thhalv10005645m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 2.5e-16 88.6 74 62.2
Thhalv10027467m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 7.3e-16 87.0 74 59.5
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 2.1e-15 85.5 62 66.1
CSS0006853 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.8e-15 85.1 50 80.0
Carub.0006s0316 Capsella rubella HOM05D002603 ORTHO05D002907 4.7e-15 84.3 74 58.1
BcaB08g34381 Brassica carinata HOM05D002603 ORTHO05D002907 1.4e-14 82.8 72 58.3
AL3G34390 Arabidopsis lyrata HOM05D002603 ORTHO05D002907 1.8e-14 82.4 74 56.8
CARHR161780 Cardamine hirsuta HOM05D002603 ORTHO05D002907 3.1e-14 81.6 74 56.8
Mapoly0062s0043 Marchantia polymorpha HOM05D002603 ORTHO05D002907 3.1e-14 81.6 68 54.4
A09p62310 Brassica napus HOM05D002603 ORTHO05D002907 2.6e-13 78.6 72 55.6
BraA09t41593Z Brassica rapa HOM05D002603 ORTHO05D002907 2.6e-13 78.6 72 55.6
BolC8t52139H Brassica oleracea HOM05D002603 ORTHO05D002907 3.4e-13 78.2 74 52.7
Pp3c22_9770 Physcomitrium patens HOM05D002603 ORTHO05D002907 7.6e-13 77.0 69 55.1
Pp3c23_1130 Physcomitrium patens HOM05D002603 ORTHO05D002907 1.3e-12 76.3 71 47.9
TAR623G0758 Trochodendron aralioides HOM05D002603 ORTHO05D002907 1.7e-12 75.9 52 71.2
BcaC07g41585 Brassica carinata HOM05D002603 ORTHO05D002907 3.8e-12 74.7 69 55.1
C08p45870 Brassica napus HOM05D002603 ORTHO05D002907 3.8e-12 74.7 69 55.1
Peaxi162Scf01087g00001 Petunia axillaris HOM05D002603 ORTHO05D002907 1.1e-11 73.2 48 68.8
Prupe.4G265900 Prunus persica HOM05D002603 ORTHO05D002907 2.4e-11 72.0 41 85.4
Pp3c20_10210 Physcomitrium patens HOM05D002603 ORTHO05D002907 3.2e-11 71.6 71 45.1
SMO134G0105 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 7.1e-11 70.5 69 47.8
Cc00_g15400 Coffea canephora HOM05D002603 ORTHO05D002907 1.6e-10 69.3 48 75.0
Lj1A1089G59 Lonicera japonica HOM05D002603 ORTHO05D002907 2.1e-10 68.9 43 81.4
SMO340G0300 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 1.7e-09 65.9 57 52.6
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 1.1e-08 63.2 71 53.5
Peaxi162Scf00406g00712 Petunia axillaris HOM05D002603 ORTHO05D002907 4.7e-07 57.8 36 72.2
CSS0017575 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 3.1e-06 55.1 32 71.9


User provided reference genes

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