Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 9.0e-74 280.0 128 100.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 2.2e-32 142.5 76 88.2
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 3.7e-19 98.6 94 52.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.0e-18 94.4 94 51.1
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.6e-17 92.4 94 50.0
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 7.7e-17 90.9 94 50.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.7e-17 90.9 94 50.0
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 8.0e-14 80.9 111 37.8
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.3e-13 79.3 111 40.5
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.0e-13 79.0 111 39.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 3.0e-13 79.0 111 39.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.0e-13 78.6 111 37.8
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 4.0e-13 78.6 111 39.6
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 5.2e-13 78.2 111 38.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.2e-13 78.2 111 37.8
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 5.2e-13 78.2 111 37.8
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.8e-13 77.8 103 42.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 6.8e-13 77.8 111 38.7
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 6.8e-13 77.8 94 43.6
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 8.8e-13 77.4 94 43.6
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.5e-12 76.6 111 38.7
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.0e-12 76.3 111 37.8
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.0e-12 76.3 103 38.8
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.6e-12 75.9 111 38.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.6e-12 75.9 111 36.9
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 3.4e-12 75.5 111 36.9
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 3.4e-12 75.5 111 36.9
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.4e-12 75.5 111 36.0
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 4.4e-12 75.1 111 36.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-12 75.1 111 36.9
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 4.4e-12 75.1 111 36.9
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 4.4e-12 75.1 111 35.1
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.4e-12 75.1 111 36.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.4e-12 75.1 96 41.7
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 5.7e-12 74.7 94 38.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 5.7e-12 74.7 111 36.0
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 7.5e-12 74.3 111 36.9
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 7.5e-12 74.3 111 36.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 7.5e-12 74.3 111 36.0
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 7.5e-12 74.3 111 36.0
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 9.8e-12 73.9 111 36.0
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 9.8e-12 73.9 94 39.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 9.8e-12 73.9 111 36.0
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.8e-12 73.9 111 36.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 9.8e-12 73.9 111 36.0
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 9.8e-12 73.9 109 37.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.3e-11 73.6 111 36.9
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.3e-11 73.6 111 36.0
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.3e-11 73.6 111 36.9
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.3e-11 73.6 94 41.5
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-11 73.6 94 39.4
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-11 73.6 94 39.4
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.3e-11 73.6 94 39.4
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.3e-11 73.6 111 36.0
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.7e-11 73.2 111 36.0
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 1.7e-11 73.2 94 40.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.2e-11 72.8 110 37.3
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.2e-11 72.8 94 39.4
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.2e-11 72.8 111 35.1
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.2e-11 72.8 111 36.9
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 38.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 38.3
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 38.3
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.7e-11 72.0 111 35.1
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 40.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 40.4
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 3.7e-11 72.0 94 39.4
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.8e-11 71.6 111 35.1
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 4.8e-11 71.6 94 41.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 4.8e-11 71.6 111 36.0
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.3e-11 71.2 94 38.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.3e-11 71.2 94 38.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 6.3e-11 71.2 92 41.3
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.3e-11 70.9 111 35.1
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.1e-10 70.5 92 39.1
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-10 70.5 111 35.1
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.4e-10 70.1 111 33.3
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.4e-10 70.1 107 36.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.4e-10 70.1 107 36.4
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.4e-10 70.1 111 36.9
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.4e-10 70.1 94 39.4
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.4e-10 70.1 94 39.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.4e-10 70.1 94 41.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.8e-10 69.7 112 33.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.8e-10 69.7 111 34.2
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.8e-10 69.7 94 37.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.4e-10 69.3 111 33.3
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.4e-10 69.3 94 36.2
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.4e-10 69.3 94 36.2
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 3.1e-10 68.9 107 35.5
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 3.1e-10 68.9 94 38.3
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 4.1e-10 68.6 94 37.2
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.0e-10 67.8 94 37.2
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 9.1e-10 67.4 94 38.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.2e-09 67.0 111 35.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-09 67.0 94 36.2
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.6e-09 66.6 96 40.6
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.6e-09 66.6 92 40.2
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.6e-09 66.6 94 38.3
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.7e-09 65.9 94 34.0
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.7e-09 65.9 94 40.4
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.5e-09 65.5 111 30.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 3.5e-09 65.5 94 39.4
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.5e-09 65.1 94 37.2
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.9e-09 64.7 94 35.1
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 7.7e-09 64.3 94 38.3
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.3e-08 63.5 111 29.7
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.3e-08 63.5 94 38.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.8e-08 62.0 38 73.7
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 3.8e-08 62.0 94 38.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 5.0e-08 61.6 109 34.9
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 6.5e-08 61.2 101 36.6
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.5e-07 59.3 111 29.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.2e-07 58.9 96 33.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 4.2e-07 58.5 99 36.4


User provided reference genes

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