Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336431 Rosa chinensis HOM05D002347 ORTHO05D348635 2.7e-29 131.3 66 100.0
RcHm_v2.0_Chr1g0321941 Rosa chinensis HOM05D002347 ORTHO05D343226 7.8e-13 76.6 61 68.9
Actinidia31758 Actinidia chinensis HOM05D002347 ORTHO05D004081 1.0e-12 76.3 95 50.5
MSTRG.27247 Avicennia marina HOM05D002347 ORTHO05D002969 8.9e-09 63.2 36 88.9
vmacro09944 Vaccinium macrocarpon HOM05D002347 ORTHO05D002969 2.0e-08 62.0 45 66.7
Atru.chr12.225 Acer truncatum HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
CANSAT56G1681 Cannabis sativa HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
FvH4_7g26350 Fragaria vesca HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
FAN01G1791 Fragaria x ananassa HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
FAN03G1767 Fragaria x ananassa HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
FAN06G1093 Fragaria x ananassa HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
FAN10G1754 Fragaria x ananassa HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
Glyma.04G224900 Glycine max HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
Glyma.06G139900 Glycine max HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
MD01G1172600 Malus domestica HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
MD07G1238900 Malus domestica HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
Phvul.009G041100 Phaseolus vulgaris HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
Prupe.2G267700 Prunus persica HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
RcHm_v2.0_Chr1g0372891 Rosa chinensis HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
VMungo1309G1988 Vigna mungo HOM05D002347 ORTHO05D002969 2.6e-08 61.6 36 88.9
CAN.G174.6 Capsicum annuum HOM05D002347 ORTHO05D002969 5.8e-08 60.5 36 83.3
Ciclev10031365m.g Citrus clementina HOM05D002347 ORTHO05D002969 5.8e-08 60.5 36 86.1
Lj1g0000819 Lotus japonicus HOM05D002347 ORTHO05D002969 5.8e-08 60.5 36 86.1
Solyc06g048480.3 Solanum lycopersicum HOM05D002347 ORTHO05D002969 5.8e-08 60.5 36 83.3
Sopen06g014630 Solanum pennellii HOM05D002347 ORTHO05D002969 5.8e-08 60.5 36 83.3
arahy.Tifrunner.gnm1.ann1.7ZHB4F Arachis hypogaea HOM05D002347 ORTHO05D002969 7.5e-08 60.1 36 86.1
arahy.Tifrunner.gnm1.ann1.SD95XD Arachis hypogaea HOM05D002347 ORTHO05D002969 7.5e-08 60.1 36 86.1
MSTRG.8868 Avicennia marina HOM05D002347 ORTHO05D002969 7.5e-08 60.1 36 86.1
QL08p065393 Quercus lobata HOM05D002347 ORTHO05D002969 7.5e-08 60.1 36 86.1
SalBow3G0313 Salvia bowleyana HOM05D002347 ORTHO05D002969 7.5e-08 60.1 36 86.1
unitig_578.g16612 Utricularia gibba HOM05D002347 ORTHO05D004081 9.8e-08 59.7 36 86.1
CAN.G297.4 Capsicum annuum HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Ca_16845_v3 Cicer arietinum L. HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Cc02_g05000 Coffea canephora HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Migut.F00559 Erythranthe guttata HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Medtr3g093520 Medicago truncatula HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Nitab4.5_0000103g0060 Nicotiana tabacum HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Nitab4.5_0001130g0020 Nicotiana tabacum HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
SGA_v2.0_scaffold44G16612 Striga asiatica HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
TPR.G13967 Trifolium pratense HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
vmacro06871 Vaccinium macrocarpon HOM05D002347 ORTHO05D002969 1.7e-07 58.9 36 83.3
Lj8C50G17 Lonicera japonica HOM05D002347 ORTHO05D004081 2.2e-07 58.5 38 78.9
Lalb_Chr11g0067591 Lupinus albus HOM05D002347 ORTHO05D002969 2.2e-07 58.5 36 83.3
MD07G1248100 Malus domestica HOM05D002347 ORTHO05D020822 2.2e-07 58.5 36 83.3
Psat5g070320 Pisum sativum HOM05D002347 ORTHO05D002969 2.2e-07 58.5 36 83.3
Actinidia13629 Actinidia chinensis HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 83.3
Cfa001176 Carpinus fangiana HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 83.3
Haze_17384 Corylus avellana HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 83.3
DCAR_014651 Daucus carota HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 80.6
DCAR_018054 Daucus carota HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 80.6
Hma1.2p1_0264F.1_g105740 Hydrangea macrophylla HOM05D002347 ORTHO05D002969 2.9e-07 58.2 36 83.3
PGR031G0734 Punica granatum HOM05D002347 ORTHO05D002969 3.7e-07 57.8 36 80.6
SGA_v2.0_scaffold60G20870 Striga asiatica HOM05D002347 ORTHO05D002969 3.7e-07 57.8 36 83.3
Potri.019G064100 Populus trichocarpa HOM05D002347 ORTHO05D002969 4.9e-07 57.4 36 80.6
Sabra19G0077300 Salix brachista HOM05D002347 ORTHO05D002969 4.9e-07 57.4 36 80.6
Cpa.g.sc19.32 Carica papaya HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Migut.F01220 Erythranthe guttata HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
FvH4_6g09240 Fragaria vesca HOM05D002347 ORTHO05D002969 6.4e-07 57.0 35 82.9
FAN05G1171 Fragaria x ananassa HOM05D002347 ORTHO05D002969 6.4e-07 57.0 35 82.9
FAN09G1600 Fragaria x ananassa HOM05D002347 ORTHO05D002969 6.4e-07 57.0 35 82.9
FAN14G2315 Fragaria x ananassa HOM05D002347 ORTHO05D002969 6.4e-07 57.0 35 82.9
Glyma.02G220400 Glycine max HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Glyma.14G187400 Glycine max HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Peaxi162Scf00073g02024 Petunia axillaris HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Potri.013G091700 Populus trichocarpa HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Rhsim03G0155000 Rhododendron simsii HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Hund15776 Selenicereus undatus HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Solyc03g095260.3 Solanum lycopersicum HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
Sopen03g025260 Solanum pennellii HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
PGSC0003DMG402005259 Solanum tuberosum HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
GSVIVG01032872001 Vitis vinifera HOM05D002347 ORTHO05D002969 6.4e-07 57.0 36 80.6
CSS0007288 Camellia sinensis var. sinensis HOM05D002347 ORTHO05D002969 8.3e-07 56.6 36 75.0
CiPaw.01G308200 Carya illinoinensis HOM05D002347 ORTHO05D002969 8.3e-07 56.6 35 85.7
Eucgr.G03173 Eucalyptus grandis HOM05D002347 ORTHO05D002969 8.3e-07 56.6 35 82.9
MBI15_g05583_MAGBIO Magnolia biondii HOM05D002347 ORTHO05D002969 1.1e-06 56.2 36 80.6
Rhsim09G0187500 Rhododendron simsii HOM05D002347 ORTHO05D002969 1.1e-06 56.2 36 77.8
TAR633G0686 Trochodendron aralioides HOM05D002347 ORTHO05D002969 1.1e-06 56.2 36 80.6
TAR636G0114 Trochodendron aralioides HOM05D002347 ORTHO05D002969 1.1e-06 56.2 36 80.6
EL10Ac2g02697 Beta vulgaris HOM05D002347 ORTHO05D002969 1.4e-06 55.8 36 77.8
AUR62031671 Chenopodium quinoa HOM05D002347 ORTHO05D002969 1.4e-06 55.8 36 77.8
HanXRQChr05g0144221 Helianthus annuus HOM05D002347 ORTHO05D002969 1.4e-06 55.8 36 80.6
MD04G1179700 Malus domestica HOM05D002347 ORTHO05D002969 1.4e-06 55.8 35 80.0
MD12G1194800 Malus domestica HOM05D002347 ORTHO05D002969 1.4e-06 55.8 35 80.0
CiPaw.02G199700 Carya illinoinensis HOM05D002347 ORTHO05D002969 1.9e-06 55.5 35 82.9
AUR62032554 Chenopodium quinoa HOM05D002347 ORTHO05D002969 1.9e-06 55.5 36 77.8
Dinv34516 Davidia involucrata HOM05D002347 ORTHO05D007199 1.9e-06 55.5 36 80.6
FAN02G0393 Fragaria x ananassa HOM05D002347 ORTHO05D002969 1.9e-06 55.5 35 80.0
Lsat_1_v5_gn_8_10961 Lactuca sativa HOM05D002347 ORTHO05D002969 1.9e-06 55.5 36 80.6
Lalb_Chr08g0239351 Lupinus albus HOM05D002347 ORTHO05D002969 1.9e-06 55.5 36 80.6
PSO339G5697 Papaver somniferum HOM05D002347 ORTHO05D002969 1.9e-06 55.5 36 80.6
PSO384G4808 Papaver somniferum HOM05D002347 ORTHO05D002969 1.9e-06 55.5 36 80.6
ECA232G3737 Erigeron canadensis HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 77.8
Lsat_1_v5_gn_2_127520 Lactuca sativa HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 80.6
Lsat_1_v5_gn_9_60480 Lactuca sativa HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 77.8
Lalb_Chr17g0344761 Lupinus albus HOM05D002347 ORTHO05D016466 2.4e-06 55.1 36 80.6
Lalb_Chr23g0272091 Lupinus albus HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 77.8
Oeu008099.1 Olea europaea HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 80.6
Oeu044174.1 Olea europaea HOM05D002347 ORTHO05D002969 2.4e-06 55.1 36 80.6
RcHm_v2.0_Chr3g0459581 Rosa chinensis HOM05D002347 ORTHO05D002969 2.4e-06 55.1 35 80.0
Ah.10g029690 Amaranthus hybridus HOM05D002347 ORTHO05D002969 3.2e-06 54.7 36 77.8
arahy.Tifrunner.gnm1.ann1.K0GZ50 Arachis hypogaea HOM05D002347 ORTHO05D002969 3.2e-06 54.7 36 77.8
arahy.Tifrunner.gnm1.ann1.S8LDEV Arachis hypogaea HOM05D002347 ORTHO05D002969 3.2e-06 54.7 36 77.8
Ciclev10011641m.g Citrus clementina HOM05D002347 ORTHO05D002969 3.2e-06 54.7 35 77.1
CDE07G0503 Ceratophyllum demersum HOM05D002347 ORTHO05D002969 4.1e-06 54.3 36 77.8
HanXRQChr09g0252421 Helianthus annuus HOM05D002347 ORTHO05D002969 5.4e-06 53.9 36 75.0
Manes.08G167000 Manihot esculenta HOM05D002347 ORTHO05D002969 5.4e-06 53.9 35 77.1
Nitab4.5_0000071g0330 Nicotiana tabacum HOM05D002347 ORTHO05D002969 5.4e-06 53.9 36 72.2
Phvul.008G187500 Phaseolus vulgaris HOM05D002347 ORTHO05D002969 7.0e-06 53.5 36 77.8
Sc11g0006130 Simmondsia chinensis HOM05D002347 ORTHO05D002969 7.0e-06 53.5 36 75.0
VMungo0647G2099 Vigna mungo HOM05D002347 ORTHO05D002969 7.0e-06 53.5 36 77.8
ClCG04G006080 Citrullus lanatus HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1
MELO3C025272.2 Cucumis melo HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1
CsaV3_4G027480 Cucumis sativus L. HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1
Eucgr.A00860 Eucalyptus grandis HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1
MBI03_g33874_MAGBIO Magnolia biondii HOM05D002347 ORTHO05D002969 9.2e-06 53.1 36 77.8
Peaxi162Scf00304g00085 Petunia axillaris HOM05D002347 ORTHO05D002969 9.2e-06 53.1 36 75.0
Sed0003094 Sechium edule HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1
Zm00001eb352130 Zea mays HOM05D002347 ORTHO05D002969 9.2e-06 53.1 35 77.1


User provided reference genes

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