Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 2.5e-59 231.9 114 100.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 4.1e-54 214.5 117 93.2
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.1e-54 214.5 117 93.2
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.4e-54 214.2 115 93.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-53 213.0 117 92.3
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.8e-53 210.3 115 92.2
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.9e-44 181.4 102 92.2
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-43 179.5 104 90.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-42 176.0 104 88.5
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 9.3e-22 107.1 117 59.0
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.7e-20 102.8 112 50.0
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.1e-19 100.1 131 45.0
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-19 100.1 115 49.6
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.3e-19 98.2 117 49.6
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 5.6e-19 97.8 116 50.0
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 5.6e-19 97.8 113 48.7
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.3e-19 97.4 115 46.1
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 9.6e-19 97.1 108 52.8
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.3e-18 96.7 114 47.4
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 6.9e-17 90.9 111 45.0
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.0e-17 90.5 127 44.1
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.2e-16 90.1 102 48.0
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.2e-16 90.1 112 50.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.5e-16 89.7 98 51.0
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-16 88.6 97 51.5
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-16 88.6 97 51.5
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.5e-16 88.2 97 51.5
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 5.8e-16 87.8 74 56.8
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 9.9e-16 87.0 71 63.4
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.3e-15 86.7 118 45.8
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 46.3
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 46.3
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 46.3
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 2.9e-15 85.5 81 51.9
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.9e-15 85.5 71 62.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 4.9e-15 84.7 74 55.4
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.4e-15 84.3 117 44.4
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 6.4e-15 84.3 87 55.2
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.4e-15 84.3 88 50.0
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.4e-15 84.3 74 58.1
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.4e-15 84.0 90 54.4
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.1e-14 83.6 97 51.5
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.4e-14 83.2 119 43.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.4e-14 83.2 97 50.5
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.9e-14 82.8 70 62.9
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 3.2e-14 82.0 99 47.5
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.2e-14 82.0 75 57.3
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 3.2e-14 82.0 78 56.4
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.2e-14 81.6 116 41.4
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 5.4e-14 81.3 72 56.9
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 5.4e-14 81.3 83 49.4
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 7.1e-14 80.9 70 60.0
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 9.3e-14 80.5 97 47.4
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 9.3e-14 80.5 70 61.4
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 1.2e-13 80.1 101 47.5
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.6e-13 79.7 109 41.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.6e-13 79.7 104 44.2
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.7e-13 79.0 122 41.0
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.7e-13 79.0 102 45.1
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 4.6e-13 78.2 93 45.2
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 7.9e-13 77.4 107 43.9
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.0e-12 77.0 110 44.5
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.0e-12 77.0 110 41.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.3e-12 76.6 122 41.8
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.0e-12 75.5 87 49.4
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.0e-12 75.5 112 41.1
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 3.0e-12 75.5 92 48.9
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.0e-12 75.5 84 50.0
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.9e-12 75.1 126 37.3
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 8.7e-12 73.9 117 44.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.1e-11 73.6 93 46.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.5e-11 73.2 94 42.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.5e-11 73.2 94 42.6
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.5e-11 73.2 96 43.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.9e-11 72.8 99 41.4
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 3.3e-11 72.0 102 49.0
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.3e-11 71.6 102 45.1
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 5.6e-11 71.2 119 40.3
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.4e-11 70.9 117 43.6
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 7.4e-11 70.9 87 43.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 7.4e-11 70.9 83 47.0
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.6e-11 70.5 103 44.7
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 9.6e-11 70.5 78 46.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.8e-10 68.9 74 54.1
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.6e-10 68.6 104 45.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 4.8e-10 68.2 113 39.8
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-09 67.0 105 40.0
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.1e-09 67.0 98 42.9
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.8e-09 66.2 84 47.6
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 2.4e-09 65.9 63 57.1
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 2.4e-09 65.9 99 42.4
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 2.4e-09 65.9 99 42.4
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 5.3e-09 64.7 94 43.6
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 103 40.8
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 9.0e-09 63.9 60 58.3
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.2e-08 63.5 84 45.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 66 50.0
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 1.2e-08 63.5 77 45.5
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.2e-08 63.5 108 39.8
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.5e-08 63.2 80 46.2
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-08 63.2 59 52.5
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.5e-08 63.2 72 48.6
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 59 50.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 57 52.6
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 59 50.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.0e-08 62.8 59 50.8
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-08 62.8 101 38.6
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-08 62.8 55 50.9
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 4.5e-08 61.6 63 50.8
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 4.5e-08 61.6 77 44.2
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.6e-08 60.8 83 41.0
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 7.6e-08 60.8 79 40.5
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.9e-08 60.5 60 58.3
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 9.9e-08 60.5 82 41.5
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.3e-07 60.1 58 51.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-07 60.1 89 41.6
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 62 48.4
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 79 40.5
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.2e-07 59.3 99 37.4
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 2.9e-07 58.9 53 52.8
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 3.8e-07 58.5 91 38.5
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 4.9e-07 58.2 58 48.3
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 8.4e-07 57.4 62 51.6
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 8.4e-07 57.4 89 41.6
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.4e-07 57.4 59 49.2
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.1e-06 57.0 88 46.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.1e-06 57.0 83 44.6
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 1.1e-06 57.0 79 40.5
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.4e-06 55.8 74 45.9
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 2.4e-06 55.8 76 39.5
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.2e-06 55.1 61 47.5
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 4.2e-06 55.1 59 45.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 9.3e-06 53.9 100 38.0
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 9.3e-06 53.9 76 39.5
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 9.3e-06 53.9 75 48.0


User provided reference genes

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