Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.0e-61 237.7 125 100.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-53 213.0 126 88.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.2e-50 201.1 126 84.1
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 8.8e-50 200.3 126 83.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.8e-50 200.3 126 83.3
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.5e-45 184.1 118 82.2
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.3e-29 133.3 127 60.6
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 6.8e-26 120.9 130 57.7
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.3e-24 114.0 125 54.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.1e-23 111.7 134 51.5
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 3.9e-21 105.1 126 50.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 8.6e-21 104.0 118 50.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.5e-20 102.4 117 50.4
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.5e-20 102.4 123 50.4
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 5.6e-20 101.3 119 48.7
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 2.1e-19 99.4 122 47.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.1e-19 99.4 118 52.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.1e-19 99.4 115 53.9
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.6e-19 98.6 118 46.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 4.7e-19 98.2 115 53.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.7e-19 98.2 126 50.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 6.2e-19 97.8 116 50.0
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-18 97.1 117 47.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.3e-18 95.9 122 46.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-18 95.9 124 50.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.3e-18 95.9 127 46.5
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.1e-18 95.5 122 48.4
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 3.1e-18 95.5 121 47.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 4.0e-18 95.1 116 50.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.2e-18 94.7 125 51.2
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.9e-18 94.0 117 47.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 8.9e-18 94.0 117 47.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.9e-18 94.0 127 46.5
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 8.9e-18 94.0 117 48.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-17 93.6 129 48.1
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.2e-17 93.6 115 50.4
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-17 93.6 119 46.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.5e-17 93.2 119 45.4
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-17 93.2 118 49.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.0e-17 92.8 118 51.7
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.6e-17 92.4 125 48.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.6e-17 92.4 125 50.4
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.6e-17 92.4 130 47.7
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.4e-17 91.7 116 47.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 5.8e-17 91.3 119 47.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.5e-17 90.9 128 46.9
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.5e-17 90.9 128 47.7
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 9.8e-17 90.5 121 48.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 9.8e-17 90.5 116 49.1
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.8e-17 90.5 110 49.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.8e-17 90.5 130 46.9
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-16 90.1 119 44.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.3e-16 90.1 130 46.9
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.7e-16 89.7 116 47.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-16 89.7 116 46.6
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-16 89.7 116 46.6
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 121 48.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.2e-16 89.4 118 43.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.2e-16 89.4 125 48.8
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.9e-16 89.0 124 47.6
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.9e-16 89.0 124 47.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 125 45.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 125 45.6
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.7e-16 88.6 118 46.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 4.9e-16 88.2 126 48.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 4.9e-16 88.2 115 46.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 6.4e-16 87.8 121 47.9
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.4e-16 87.8 127 46.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.4e-16 87.8 127 46.5
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.3e-16 87.4 126 46.8
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 126 46.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-15 87.0 118 49.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.4e-15 86.7 121 48.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-15 86.7 122 48.4
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 118 49.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.9e-15 86.3 116 46.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.4e-15 85.9 125 47.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.4e-15 85.9 116 46.6
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.2e-15 85.5 122 45.9
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.4e-15 84.7 119 47.1
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.4e-15 84.7 116 45.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 7.0e-15 84.3 117 44.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 9.2e-15 84.0 119 43.7
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 118 44.1
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.1e-14 82.8 111 46.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.7e-14 82.4 81 55.6
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.5e-14 82.0 119 40.3
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 4.6e-14 81.6 124 46.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 4.6e-14 81.6 118 45.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.8e-14 80.9 119 43.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 7.8e-14 80.9 119 43.7
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.0e-13 80.5 124 43.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.0e-13 80.5 115 43.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.3e-13 80.1 119 41.2
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-13 80.1 108 46.3
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.7e-13 79.7 142 40.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-13 79.7 116 41.4
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-13 79.7 109 47.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.0e-13 79.0 126 42.9
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.0e-13 79.0 102 47.1
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 3.9e-13 78.6 137 40.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.1e-13 78.2 121 44.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 8.6e-13 77.4 118 44.1
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.6e-13 77.4 120 41.7
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.6e-13 77.4 133 42.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 8.6e-13 77.4 115 44.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-12 77.0 130 40.0
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.9e-12 76.3 124 38.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.3e-12 75.5 119 40.3
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.3e-12 75.5 119 40.3
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.3e-12 75.5 113 43.4
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.3e-12 75.5 131 42.0
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 3.3e-12 75.5 128 42.2
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.3e-12 75.1 102 46.1
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.3e-12 75.1 117 45.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 5.6e-12 74.7 123 39.8
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 5.6e-12 74.7 123 39.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 7.3e-12 74.3 120 41.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 7.3e-12 74.3 120 41.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 7.3e-12 74.3 120 41.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 9.5e-12 73.9 122 40.2
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-11 73.6 118 42.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.6e-11 73.2 121 38.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.6e-11 73.2 126 41.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.6e-11 73.2 129 43.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.1e-11 72.8 134 41.8
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.1e-11 72.8 123 38.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.8e-11 72.4 124 38.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.8e-11 72.4 90 50.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 4.7e-11 71.6 127 37.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.7e-11 71.6 112 41.1
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.7e-11 71.6 124 37.9
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 6.2e-11 71.2 134 41.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.2e-11 71.2 126 39.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.8e-10 69.7 120 37.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-10 69.7 112 43.8
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 3.1e-10 68.9 139 37.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.0e-10 68.6 120 38.3
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.2e-09 67.0 123 36.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.0e-09 66.2 141 34.8
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.6e-09 65.9 129 41.1
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 4.4e-09 65.1 123 37.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 4.4e-09 65.1 129 38.0
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-08 63.5 99 40.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.2e-08 62.8 110 40.9
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.9e-08 62.4 118 36.4
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.4e-08 61.2 133 35.3
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.3e-08 60.8 125 37.6
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-07 60.5 121 34.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.4e-07 59.3 100 39.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.2e-07 58.9 76 47.4
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 7.1e-07 57.8 137 38.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.1e-07 57.8 117 38.5
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.6e-06 56.6 115 40.0
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 2.1e-06 56.2 110 32.7
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.7e-06 55.8 119 35.3
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.7e-06 55.8 71 42.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.7e-06 55.8 71 42.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.6e-06 55.1 79 43.0


User provided reference genes

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