Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336331 Rosa chinensis HOM05D003123 ORTHO05D003492 2.0e-43 178.7 90 100.0
RcHm_v2.0_Chr6g0290001 Rosa chinensis HOM05D003123 ORTHO05D003492 1.5e-14 82.8 41 95.1
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.2e-13 79.7 49 79.6
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 9.0e-12 73.6 59 64.4
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 9.0e-12 73.6 59 64.4
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.6e-11 72.0 59 64.4
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 5.8e-11 70.9 59 61.0
RcHm_v2.0_Chr2g0090591 Rosa chinensis HOM05D003123 ORTHO05D003492 5.8e-11 70.9 41 82.9
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 5.4e-09 64.3 41 78.0
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 5.4e-09 64.3 41 78.0
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 5.4e-09 64.3 41 78.0
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 7.1e-09 63.9 44 70.5
FAN28G0861 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.7e-08 62.0 41 73.2
FAN07G0983 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.0e-07 60.1 48 64.6
Prupe.4G066100 Prunus persica HOM05D003123 ORTHO05D003492 1.7e-07 59.3 44 68.2
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 2.3e-07 58.9 43 67.4
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.3e-07 58.9 40 70.0
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 3.0e-07 58.5 41 68.3
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 3.9e-07 58.2 41 68.3
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 5.1e-07 57.8 63 47.6
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 5.1e-07 57.8 41 68.3
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 5.1e-07 57.8 41 68.3
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 6.6e-07 57.4 28 89.3
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 1.1e-06 56.6 45 57.8
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.1e-06 56.6 56 51.8
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 1.1e-06 56.6 40 67.5
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.5e-06 56.2 51 58.8
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.5e-06 56.2 43 65.1
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 1.9e-06 55.8 28 85.7
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.9e-06 55.8 33 75.8
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 1.9e-06 55.8 33 72.7
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.9e-06 55.8 27 88.9
MD15G1186700 Malus domestica HOM05D003123 ORTHO05D003492 1.9e-06 55.8 44 68.2
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 2.5e-06 55.5 28 85.7
Os02g0116000 Oryza sativa ssp. japonica HOM05D003123 ORTHO05D003492 2.5e-06 55.5 35 71.4
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 2.5e-06 55.5 36 69.4
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 3.3e-06 55.1 64 46.9
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 4.3e-06 54.7 41 61.0
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 4.3e-06 54.7 29 79.3
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 4.3e-06 54.7 67 47.8
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 4.3e-06 54.7 51 56.9
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 5.6e-06 54.3 33 72.7
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 5.6e-06 54.3 29 82.8
Cpa.g.sc66.20 Carica papaya HOM05D003123 ORTHO05D003492 7.3e-06 53.9 40 65.0
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 7.3e-06 53.9 41 65.9
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 7.3e-06 53.9 65 46.2
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 7.3e-06 53.9 34 70.6
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 7.3e-06 53.9 58 46.6
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 9.6e-06 53.5 30 73.3
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 9.6e-06 53.5 43 58.1
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 9.6e-06 53.5 53 54.7
Rhsim06G0030700 Rhododendron simsii HOM05D003123 ORTHO05D003492 9.6e-06 53.5 28 82.1
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 9.6e-06 53.5 28 82.1


User provided reference genes

Program Settings