Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336251 Rosa chinensis HOM05D003490 ORTHO05D026861 4.0e-33 144.1 66 100.0
RcHm_v2.0_Chr4g0426951 Rosa chinensis HOM05D003490 ORTHO05D026861 1.8e-30 135.2 66 95.5
RcHm_v2.0_Chr4g0434561 Rosa chinensis HOM05D003490 ORTHO05D026861 7.0e-30 133.3 66 93.9
Ca_20969_v3 Cicer arietinum L. HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
CsaV3_7G033710 Cucumis sativus L. HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
FvH4_6g37000 Fragaria vesca HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
FAN02G2379 Fragaria x ananassa HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
FAN05G5356 Fragaria x ananassa HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
FAN09G3564 Fragaria x ananassa HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
QL05p084430 Quercus lobata HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
QL05p084776 Quercus lobata HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
RcHm_v2.0_Chr2g0149541 Rosa chinensis HOM05D003490 ORTHO05D004835 8.9e-09 63.2 26 100.0
Atru.chr1.2661 Acer truncatum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Aa31LG4G2100 Aethionema arabicum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Ah.16g108080 Amaranthus hybridus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Aqoxy4G02358 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Aqoxy7G02759 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
AT1G78900 Arabidopsis thaliana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
arahy.Tifrunner.gnm1.ann1.A6WMM1 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
arahy.Tifrunner.gnm1.ann1.EJI1J0 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
MSTRG.10875 Avicennia marina HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
EL10Ac2g03529 Beta vulgaris HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaB02g07185 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaB03g16050 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaB05g25163 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaC03g15855 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaC08g45403 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BcaC08g47444 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
A02p22410 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
A07p27430 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
C02p36070 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
C06p30350 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BolC2t09622H Brassica oleracea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BolC6t38198H Brassica oleracea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BolC6t40297H Brassica oleracea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BraA02t07245Z Brassica rapa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BraA07t30384Z Brassica rapa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
BraA07t31915Z Brassica rapa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
CSS0028180 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
CANSAT01G2292 Cannabis sativa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Carub.0002s2573 Capsella rubella HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Cfa002154 Carpinus fangiana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
AUR62036002 Chenopodium quinoa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
ClCG09G001630 Citrullus lanatus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Ciclev10030969m.g Citrus clementina HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Haze_16255 Corylus avellana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
MELO3C024284.2 Cucumis melo HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
DCAR_007671 Daucus carota HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Dinv37778 Davidia involucrata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
ECA234G0432 Erigeron canadensis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
ECA234G3399 Erigeron canadensis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Migut.D00889 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Migut.I01199 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Eucgr.F04030 Eucalyptus grandis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Eucgr.J03179 Eucalyptus grandis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Thhalv10018288m.g Eutrema salsugineum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Glyma.07G002300 Glycine max HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Glyma.08G224400 Glycine max HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
HanXRQChr10g0311201 Helianthus annuus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
HanXRQChr12g0359711 Helianthus annuus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Hma1.2p1_0517F.1_g170820 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Hma1.2p1_1111F.1_g258430 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Hma1.2p1_3612F.1_g337050 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Lsat_1_v5_gn_4_89100 Lactuca sativa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Lsat_1_v5_gn_5_137221 Lactuca sativa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Lj9A542G29 Lonicera japonica HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Lj3g0014966 Lotus japonicus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Lalb_Chr01g0011701 Lupinus albus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
MD09G1165200 Malus domestica HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
MD17G1162700 Malus domestica HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Manes.06G177500 Manihot esculenta HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Manes.14G008200 Manihot esculenta HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Medtr4g005410 Medicago truncatula HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Nn8g40889 Nelumbo nucifera HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Oeu038373.4 Olea europaea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Oeu049636.1 Olea europaea HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
PSO144G0044 Papaver somniferum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
PSO170G3382 Papaver somniferum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Phvul.010G163900 Phaseolus vulgaris HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Psat7g265520 Pisum sativum HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Potri.008G005000 Populus trichocarpa HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Prupe.3G022700 Prunus persica HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Rhsim08G0250100 Rhododendron simsii HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Sabra08G0002500 Salix brachista HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
SalBow6G0193 Salvia bowleyana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Sp5g33920 Schrenkiella parvula HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Sed0012993 Sechium edule HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Hund22442 Selenicereus undatus HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
Sc15g0001120 Simmondsia chinensis HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
THA.LOC104808104 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
THA.LOC104812329 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
THA.LOC104813629 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
TPR.G38757 Trifolium pratense HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
TWI18G1026 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
TWI75G0499 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
TAR626G0762 Trochodendron aralioides HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
vmacro18745 Vaccinium macrocarpon HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
VMungo0331G0590 Vigna mungo HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
GSVIVG01029546001 Vitis vinifera HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
GSVIVG01035538001 Vitis vinifera HOM05D003490 ORTHO05D004835 2.0e-08 62.0 26 96.2
SGA_v2.0_scaffold122G33265 Striga asiatica HOM05D003490 ORTHO05D004835 2.6e-08 61.6 26 92.3
SGA_v2.0_scaffold71G23987 Striga asiatica HOM05D003490 ORTHO05D004835 2.6e-08 61.6 26 92.3
AL2G39320 Arabidopsis lyrata HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
CAN.G308.15 Capsicum annuum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
CAN.G390.39 Capsicum annuum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
CARHR072490 Cardamine hirsuta HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
AUR62041619 Chenopodium quinoa HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Nitab4.5_0000357g0270 Nicotiana tabacum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Nitab4.5_0007548g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Peaxi162Scf00177g00618 Petunia axillaris HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Solyc06g063330.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Solyc12g055800.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Sopen06g022800 Solanum pennellii HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Sopen12g024260 Solanum pennellii HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
PGSC0003DMG400026502 Solanum tuberosum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
PGSC0003DMG400028839 Solanum tuberosum HOM05D003490 ORTHO05D004835 4.4e-08 60.8 26 92.3
Cpa.g.sc155.13 Carica papaya HOM05D003490 ORTHO05D004835 5.8e-08 60.5 26 92.3
MSTRG.4524 Avicennia marina HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
MSTRG.9558 Avicennia marina HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
CiPaw.01G091000 Carya illinoinensis HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
Cc04_g00160 Coffea canephora HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
Dinv20337 Davidia involucrata HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
Oeu048560.2 Olea europaea HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 96.2
Potri.010G253500 Populus trichocarpa HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 96.2
PGR102G0759 Punica granatum HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 96.2
Sabra10G0197200 Salix brachista HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 96.2
Hund19288 Selenicereus undatus HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 92.3
unitig_748.g7473 Utricularia gibba HOM05D003490 ORTHO05D004835 7.5e-08 60.1 26 96.2
Actinidia38808 Actinidia chinensis HOM05D003490 ORTHO05D004835 9.8e-08 59.7 26 92.3
Actinidia21886 Actinidia chinensis HOM05D003490 ORTHO05D004835 1.3e-07 59.3 26 88.5
Nitab4.5_0002354g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.7e-07 58.9 26 88.5
Nitab4.5_0003757g0110 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.7e-07 58.9 26 88.5
Duzib192G0250 Durio zibethinus HOM05D003490 ORTHO05D004835 3.7e-07 57.8 26 92.3
CDE06G2075 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
COL.COLO4_31156 Corchorus olitorius HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Duzib160G0715 Durio zibethinus HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Duzib235G1262 Durio zibethinus HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
MBI16_g34879_MAGBIO Magnolia biondii HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Os06g0662000 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
SEGI_20998 Sequoiadendron giganteum HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Thecc.06G057300 Theobroma cacao HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Zm00001eb206930 Zea mays HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Zm00001eb233450 Zea mays HOM05D003490 ORTHO05D004835 4.9e-07 57.4 26 92.3
Pp3c20_16000 Physcomitrium patens HOM05D003490 ORTHO05D004835 6.4e-07 57.0 26 88.5
Pp3c23_8330 Physcomitrium patens HOM05D003490 ORTHO05D004835 6.4e-07 57.0 26 88.5
Pp3c8_10370 Physcomitrium patens HOM05D003490 ORTHO05D004835 6.4e-07 57.0 26 88.5
HPP92_010142 Vanilla planifolia HOM05D003490 ORTHO05D004835 6.4e-07 57.0 26 92.3
TAR383G0695 Trochodendron aralioides HOM05D003490 ORTHO05D004835 8.3e-07 56.6 26 84.6
Gohir.A05G114800 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
Gohir.A10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
Gohir.D05G115200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
Gohir.D10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
Gorai.009G119300 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
Gorai.011G002600 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.1e-06 56.2 26 88.5
AT1G16820 Arabidopsis thaliana HOM05D003490 ORTHO05D026861 2.4e-06 55.1 26 88.5
ATR0626G015 Amborella trichopoda HOM05D003490 ORTHO05D004835 3.2e-06 54.7 26 80.8
CSS0044695 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 3.2e-06 54.7 28 78.6
SMO351G0215 Selaginella moellendorffii HOM05D003490 ORTHO05D004835 4.1e-06 54.3 26 80.8
Os02g0175400 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 5.4e-06 53.9 26 84.6
AagrBONN_evm.TU.Sc2ySwM_368.2488 Anthoceros agrestis HOM05D003490 ORTHO05D004835 7.0e-06 53.5 26 76.9
Mapoly0011s0112 Marchantia polymorpha HOM05D003490 ORTHO05D004835 9.2e-06 53.1 26 84.6


User provided reference genes

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