Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336151 Rosa chinensis HOM05D000832 ORTHO05D013013 3.0e-28 127.9 68 100.0
RcHm_v2.0_Chr2g0118311 Rosa chinensis HOM05D000832 ORTHO05D013013 8.2e-26 119.8 66 95.5
RcHm_v2.0_Chr7g0200221 Rosa chinensis HOM05D000832 ORTHO05D013013 1.6e-21 105.5 57 96.5
RcHm_v2.0_Chr2g0135891 Rosa chinensis HOM05D000832 ORTHO05D013013 1.5e-19 99.0 57 93.0
RcHm_v2.0_Chr2g0155371 Rosa chinensis HOM05D000832 ORTHO05D013013 4.4e-19 97.4 57 91.2
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 4.8e-18 94.0 56 87.5
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 4.8e-18 94.0 57 84.2
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 6.3e-18 93.6 56 85.7
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 6.3e-18 93.6 56 85.7
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 1.1e-17 92.8 56 83.9
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.1e-17 92.8 56 83.9
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 1.4e-17 92.4 57 82.5
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.4e-17 92.4 56 83.9
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.8e-17 92.0 56 83.9
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.8e-17 92.0 56 83.9
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 1.8e-17 92.0 56 83.9
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.4e-17 91.7 56 83.9
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 3.1e-17 91.3 56 83.9
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 3.1e-17 91.3 56 83.9
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 3.1e-17 91.3 56 83.9
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 3.1e-17 91.3 56 82.1
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 4.1e-17 90.9 56 83.9
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 4.1e-17 90.9 56 82.1
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 5.3e-17 90.5 56 83.9
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 7.0e-17 90.1 56 82.1
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 9.1e-17 89.7 56 83.9
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 9.1e-17 89.7 56 82.1
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 9.1e-17 89.7 56 82.1
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.2e-16 89.4 56 80.4
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 1.2e-16 89.4 56 82.1
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.6e-16 89.0 56 80.4
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 2.0e-16 88.6 56 82.1
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 2.7e-16 88.2 56 80.4
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 2.7e-16 88.2 56 80.4
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 2.7e-16 88.2 56 80.4
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 2.7e-16 88.2 56 80.4
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 82.1
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 82.1
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 82.1
RcHm_v2.0_Chr4g0407121 Rosa chinensis HOM05D000832 ORTHO05D013013 3.5e-16 87.8 51 92.2
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 78.6
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 78.6
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 78.6
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 3.5e-16 87.8 56 80.4
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 76.8
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 82.1
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 80.4
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 76.8
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 76.8
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 82.1
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 4.5e-16 87.4 56 82.1
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 5.9e-16 87.0 56 82.1
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 7.7e-16 86.7 56 76.8
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 1.0e-15 86.3 56 80.4
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 1.0e-15 86.3 56 80.4
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.0e-15 86.3 56 75.0
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 1.0e-15 86.3 68 69.1
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.3e-15 85.9 56 76.8
RcHm_v2.0_Chr1g0355571 Rosa chinensis HOM05D000832 ORTHO05D015072 1.3e-15 85.9 51 90.2
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 1.7e-15 85.5 56 78.6
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.7e-15 85.5 56 78.6
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 2.2e-15 85.1 56 75.0
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 2.2e-15 85.1 56 80.4
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 2.9e-15 84.7 62 67.7
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.9e-15 84.7 56 78.6
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.9e-15 84.7 56 78.6
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 3.8e-15 84.3 56 76.8
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 3.8e-15 84.3 57 75.4
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 3.8e-15 84.3 56 76.8
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 3.8e-15 84.3 55 74.5
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 3.8e-15 84.3 56 76.8
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 3.8e-15 84.3 56 75.0
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 5.0e-15 84.0 57 75.4
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 73.2
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 76.8
Glyma.02G130896 Glycine max HOM05D000832 ORTHO05D013013 6.5e-15 83.6 56 76.8
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 6.5e-15 83.6 56 78.6
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 8.5e-15 83.2 56 73.2
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 8.5e-15 83.2 56 78.6
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 8.5e-15 83.2 57 77.2
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.1e-14 82.8 56 76.8
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 1.1e-14 82.8 56 76.8
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.5e-14 82.4 57 75.4
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 1.5e-14 82.4 56 76.8
arahy.Tifrunner.gnm1.ann1.7GR9X4 Arachis hypogaea HOM05D000832 ORTHO05D013013 1.9e-14 82.0 56 75.0
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 1.9e-14 82.0 54 77.8
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 2.5e-14 81.6 56 75.0
Cfa012566 Carpinus fangiana HOM05D000342 ORTHO05D000217 2.5e-14 81.6 56 76.8
Glyma.02G118228 Glycine max HOM05D000832 ORTHO05D013013 2.5e-14 81.6 56 75.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 2.5e-14 81.6 56 73.2
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 2.5e-14 81.6 56 73.2
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 3.2e-14 81.3 56 73.2
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 3.2e-14 81.3 57 73.7
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 4.2e-14 80.9 56 73.2
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 4.2e-14 80.9 56 69.6
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 4.2e-14 80.9 56 75.0
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 5.5e-14 80.5 56 73.2
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 5.5e-14 80.5 56 73.2
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 5.5e-14 80.5 56 73.2
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 7.2e-14 80.1 56 71.4
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 7.2e-14 80.1 56 71.4
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 7.2e-14 80.1 56 73.2
Hma1.2p1_0111F.1_g053130 Hydrangea macrophylla HOM05D000832 ORTHO05D013013 9.4e-14 79.7 51 80.4
RcHm_v2.0_Chr5g0035831 Rosa chinensis HOM05D000832 ORTHO05D013013 9.4e-14 79.7 57 77.2
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 9.4e-14 79.7 56 75.0
unitig_27.g25235 Utricularia gibba HOM05D000832 ORTHO05D000982 9.4e-14 79.7 55 69.1
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 1.6e-13 79.0 56 71.4
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.6e-13 79.0 56 75.0
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 1.6e-13 79.0 57 71.9
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.6e-13 79.0 56 73.2
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 1.6e-13 79.0 56 71.4
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.6e-13 79.0 56 73.2
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 2.1e-13 78.6 56 71.4
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 2.7e-13 78.2 56 73.2
AUR62007787 Chenopodium quinoa HOM05D000756 ORTHO05D013013 2.7e-13 78.2 55 72.7
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 3.6e-13 77.8 56 76.8
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 3.6e-13 77.8 56 73.2
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 3.6e-13 77.8 56 73.2
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 4.7e-13 77.4 56 71.4
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 4.7e-13 77.4 56 71.4
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 4.7e-13 77.4 56 69.6
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 6.1e-13 77.0 57 68.4
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 6.1e-13 77.0 55 69.1
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 8.0e-13 76.6 56 69.6
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 8.0e-13 76.6 56 67.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 1.4e-12 75.9 56 71.4
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 1.8e-12 75.5 56 71.4
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.8e-12 75.5 56 69.6
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.2e-11 72.8 55 70.9
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.2e-11 72.8 55 70.9
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 1.2e-11 72.8 55 70.9
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 3.4e-11 71.2 51 70.6
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 4.4e-11 70.9 59 62.7
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 4.4e-11 70.9 56 62.5
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 2.2e-10 68.6 56 60.7
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 1.4e-09 65.9 47 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 2.4e-09 65.1 56 60.7
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 3.1e-09 64.7 56 58.9
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 7.7e-08 60.1 56 53.6
CBR_g51453 Chara braunii HOM05D000832 ORTHO05D000982 3.8e-07 57.8 56 51.8
Glyma.02G118180 Glycine max HOM05D000832 ORTHO05D013013 2.5e-06 55.1 42 71.4
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 5.5e-06 53.9 63 47.6


User provided reference genes

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