Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 5.2e-42 174.1 96 100.0
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 4.7e-19 97.8 62 85.5
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.8e-18 95.9 62 85.5
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-18 95.9 62 85.5
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-18 95.9 62 85.5
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-18 95.9 62 85.5
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-18 95.9 62 85.5
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.0e-18 94.7 77 71.4
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 9.2e-15 83.6 62 74.2
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 2.7e-14 82.0 78 62.8
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 2.3e-13 79.0 62 71.0
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 2.3e-13 79.0 83 60.2
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 3.9e-13 78.2 62 67.7
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.9e-13 78.2 62 71.0
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 8.6e-13 77.0 62 66.1
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.1e-12 76.6 84 53.6
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 1.5e-12 76.3 62 69.4
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.5e-12 76.3 62 67.7
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.9e-12 75.9 62 67.7
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.9e-12 75.9 62 66.1
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 1.9e-12 75.9 62 69.4
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 3.3e-12 75.1 62 66.1
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 3.3e-12 75.1 61 70.5
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 4.3e-12 74.7 62 67.7
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 4.3e-12 74.7 62 62.9
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 5.6e-12 74.3 64 65.6
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 5.6e-12 74.3 62 64.5
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 7.3e-12 73.9 62 69.4
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 9.6e-12 73.6 62 67.7
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 9.6e-12 73.6 62 64.5
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 9.6e-12 73.6 62 66.1
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 1.2e-11 73.2 94 51.1
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.2e-11 73.2 61 70.5
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 1.2e-11 73.2 89 51.7
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 1.2e-11 73.2 61 68.9
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.2e-11 73.2 62 66.1
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 1.2e-11 73.2 62 66.1
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.2e-11 73.2 62 66.1
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 1.6e-11 72.8 62 66.1
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.6e-11 72.8 65 61.5
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 1.6e-11 72.8 65 61.5
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 1.6e-11 72.8 65 61.5
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 1.6e-11 72.8 65 61.5
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.6e-11 72.8 62 66.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 1.6e-11 72.8 62 66.1
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.6e-11 72.8 60 70.0
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.6e-11 72.8 61 68.9
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 2.1e-11 72.4 62 62.9
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 2.1e-11 72.4 65 61.5
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 2.1e-11 72.4 65 61.5
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 2.1e-11 72.4 62 64.5
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 2.1e-11 72.4 62 62.9
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 2.1e-11 72.4 62 62.9
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 2.8e-11 72.0 65 61.5
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.8e-11 72.0 65 61.5
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 2.8e-11 72.0 77 58.4
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 3.6e-11 71.6 62 62.9
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 3.6e-11 71.6 62 64.5
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 4.7e-11 71.2 62 64.5
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 4.7e-11 71.2 71 56.3
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 4.7e-11 71.2 67 59.7
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 6.2e-11 70.9 62 62.9
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 6.2e-11 70.9 84 52.4
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 8.1e-11 70.5 62 61.3
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 8.1e-11 70.5 62 64.5
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 8.1e-11 70.5 62 61.3
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 8.1e-11 70.5 60 66.7
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.1e-10 70.1 62 66.1
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 1.1e-10 70.1 88 53.4
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.1e-10 70.1 62 67.7
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 1.1e-10 70.1 65 64.6
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 1.1e-10 70.1 62 61.3
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.4e-10 69.7 62 69.4
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.4e-10 69.7 62 59.7
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.4e-10 69.7 62 62.9
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.4e-10 69.7 61 67.2
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.8e-10 69.3 62 64.5
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.4e-10 68.9 62 59.7
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 2.4e-10 68.9 62 59.7
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 3.1e-10 68.6 62 58.1
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.1e-10 68.6 62 64.5
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 4.0e-10 68.2 62 61.3
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 5.2e-10 67.8 65 56.9
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 5.2e-10 67.8 61 65.6
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 8.9e-10 67.0 88 51.1
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 8.9e-10 67.0 62 59.7
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 8.9e-10 67.0 62 66.1
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.2e-09 66.6 62 66.1
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.2e-09 66.6 62 62.9
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 3.4e-09 65.1 61 59.0
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 3.4e-09 65.1 62 58.1
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 4.4e-09 64.7 61 60.7
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 5.8e-09 64.3 62 62.9
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 5.8e-09 64.3 62 61.3
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 5.8e-09 64.3 96 43.8
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 5.8e-09 64.3 96 42.7
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 7.6e-09 63.9 61 57.4
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 7.6e-09 63.9 49 71.4
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 9.9e-09 63.5 64 59.4
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 9.9e-09 63.5 62 59.7
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 9.9e-09 63.5 60 61.7
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 9.9e-09 63.5 61 57.4
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 9.9e-09 63.5 62 59.7
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 9.9e-09 63.5 62 59.7
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.3e-08 63.2 67 56.7
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 1.3e-08 63.2 62 56.5
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.3e-08 63.2 62 62.9
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.3e-08 63.2 62 59.7
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.3e-08 63.2 62 59.7
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.3e-08 63.2 62 59.7
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.7e-08 62.8 47 70.2
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.7e-08 62.8 67 56.7
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 2.9e-08 62.0 62 59.7
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.9e-08 62.0 84 50.0
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 2.9e-08 62.0 81 50.6
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 3.8e-08 61.6 62 58.1
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 4.9e-08 61.2 64 59.4
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 8.4e-08 60.5 74 44.6
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 8.4e-08 60.5 99 46.5
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 1.1e-07 60.1 62 58.1
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 1.4e-07 59.7 66 54.5
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.4e-07 58.9 62 56.5
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.2e-07 58.2 48 64.6
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 5.4e-07 57.8 94 45.7
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 5.4e-07 57.8 49 61.2
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.2e-06 56.6 63 52.4
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 3.5e-06 55.1 40 75.0
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 3.5e-06 55.1 61 57.4
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.5e-06 55.1 48 62.5


User provided reference genes

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