Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 4.1e-69 264.6 135 100.0
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 1.5e-23 113.2 68 88.2
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.6e-23 110.9 68 85.3
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.6e-23 110.9 68 85.3
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 9.9e-23 110.5 68 83.8
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 6.4e-22 107.8 68 83.8
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 8.4e-22 107.5 68 82.4
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 1.2e-20 103.6 68 79.4
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 4.6e-20 101.7 68 76.5
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 6.7e-19 97.8 68 73.5
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 6.7e-19 97.8 68 73.5
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 3.3e-18 95.5 68 73.5
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 3.3e-18 95.5 68 73.5
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 5.6e-18 94.7 68 75.0
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 7.4e-18 94.4 68 70.6
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 7.4e-18 94.4 68 73.5
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 1.3e-17 93.6 68 70.6
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 1.6e-17 93.2 68 70.6
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 2.1e-17 92.8 68 67.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 2.8e-17 92.4 68 72.1
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 4.8e-17 91.7 68 69.1
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 4.8e-17 91.7 68 69.1
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 6.2e-17 91.3 68 70.6
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 6.2e-17 91.3 68 72.1
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 6.2e-17 91.3 68 70.6
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 6.2e-17 91.3 68 70.6
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 8.1e-17 90.9 69 66.7
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 8.1e-17 90.9 68 69.1
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 1.1e-16 90.5 68 66.2
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 1.1e-16 90.5 68 70.6
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 1.8e-16 89.7 69 66.7
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 1.8e-16 89.7 69 65.2
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 2.4e-16 89.4 68 67.6
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 2.4e-16 89.4 68 67.6
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 2.4e-16 89.4 68 66.2
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 3.1e-16 89.0 68 66.2
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 3.1e-16 89.0 67 68.7
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 4.0e-16 88.6 69 63.8
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 5.3e-16 88.2 69 66.7
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 5.3e-16 88.2 68 66.2
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 9.0e-16 87.4 68 69.1
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 9.0e-16 87.4 67 67.2
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 9.0e-16 87.4 68 64.7
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 9.0e-16 87.4 67 65.7
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 1.2e-15 87.0 68 63.2
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 1.2e-15 87.0 68 63.2
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 1.2e-15 87.0 68 67.6
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 1.2e-15 87.0 68 67.6
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 1.2e-15 87.0 68 64.7
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 67.6
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 67.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 67.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 67.6
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 64.7
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 63.2
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 1.5e-15 86.7 68 66.2
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 2.0e-15 86.3 68 69.1
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 2.0e-15 86.3 69 66.7
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 2.0e-15 86.3 69 63.8
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 2.0e-15 86.3 68 66.2
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 2.0e-15 86.3 68 67.6
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 2.0e-15 86.3 68 64.7
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 2.6e-15 85.9 68 63.2
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 3.4e-15 85.5 68 63.2
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 3.4e-15 85.5 68 64.7
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 4.5e-15 85.1 68 66.2
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.5e-15 85.1 69 60.9
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 4.5e-15 85.1 68 61.8
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 7.6e-15 84.3 68 66.2
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 7.6e-15 84.3 68 66.2
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 9.9e-15 84.0 68 58.8
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 9.9e-15 84.0 68 64.7
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 9.9e-15 84.0 68 63.2
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 1.3e-14 83.6 68 63.2
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 2.2e-14 82.8 68 55.9
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 2.9e-14 82.4 68 63.2
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 2.9e-14 82.4 68 61.8
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 3.8e-14 82.0 68 64.7
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 6.4e-14 81.3 68 61.8
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 6.4e-14 81.3 68 60.3
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 1.1e-13 80.5 68 58.8
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 1.1e-13 80.5 69 60.9
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 4.2e-13 78.6 68 63.2
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 5.5e-13 78.2 71 57.7
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 9.3e-13 77.4 68 58.8
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 9.3e-13 77.4 69 58.0
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 9.3e-13 77.4 69 58.0
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 2.7e-12 75.9 68 58.8
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 2.7e-12 75.9 80 53.8
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 3.5e-12 75.5 69 58.0
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 3.5e-12 75.5 68 58.8
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 2.3e-11 72.8 68 57.4
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 3.0e-11 72.4 78 56.4
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.9e-11 72.0 68 55.9
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 1.5e-10 70.1 69 52.2
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 4.3e-10 68.6 69 52.2
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 7.4e-10 67.8 69 49.3
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 9.6e-10 67.4 68 54.4
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 1.2e-07 60.5 71 47.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 3.4e-07 58.9 63 54.0
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 7.6e-07 57.8 68 45.6
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.2e-06 56.2 68 45.6


User provided reference genes

Program Settings